Evidence map›Paper›PMID 23239802›Full record

ArticleClinical and vaccine immunology : CVI2013

Gene expression profile and immunological evaluation of unique hypothetical unknown proteins of Mycobacterium leprae by using quantitative real-time PCR.

Hee Jin Kim, Kalyani Prithiviraj, Nathan Groathouse, Patrick J Brennan, John S Spencer

Open access · diamondAbstract read
In one paragraph

Article in Clinical and vaccine immunology : CVI, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Diagnostic Performance of a NovelFrontiers in microbiology · 2022
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Hee Jin KimDepartment of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado, USA. Hee.Kim@colostate.edu
Kalyani Prithiviraj
Nathan Groathouse
Patrick J Brennan
John S Spencer
Colorado State University · US

Funding

Leprosy Bacillus: From Genotype to Phenotype to ToolsR01AI047197 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI BRENNAN, PATRICK JOSEPH · 2001 to 2009
$3.2M
Application of Novel Antigens and Integrated Microfluidics for Leprosy DiagnosisR01AI082575 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MODLIN, ROBERT L · 2009 to 2013
$1.7M
Leprosy Research Support-Post Genome -26625469N01AI025469 · NIAID · Colorado State University · 2004 to 2004
–
NIAID NIH HHS N01 AI-025469NIAID NIH HHS N01 AI025469NIAID NIH HHS R01 AI-047197NIAID NIH HHS R01 AI047197NIAID NIH HHS R01 AI082575NIAID NIH HHS R01AI-082575-01
6 · The paper itself

Abstract

The cell-mediated immunity (CMI)-based in vitro gamma interferon release assay (IGRA) of Mycobacterium leprae-specific antigens has potential as a promising diagnostic means to detect those individuals in the early stages of M. leprae infection. Diagnosis of leprosy is a major obstacle toward ultimate disease control and has been compromised in the past by the lack of specific markers. Comparative bioinformatic analysis among mycobacterial genomes identified potential M. leprae-specific proteins called "hypothetical unknowns." Due to massive gene decay and the prevalence of pseudogenes, it is unclear whether any of these proteins are expressed or are immunologically relevant. In this study, we performed cDNA-based quantitative real-time PCR to investigate the expression status of 131 putative open reading frames (ORFs) encoding hypothetical unknowns. Twenty-six of the M. leprae-specific antigen candidates showed significant levels of gene expression compared to that of ESAT-6 (ML0049), which is an important T cell antigen of low abundance in M. leprae. Fifteen of 26 selected antigen candidates were expressed and purified in Escherichia coli. The seroreactivity to these proteins of pooled sera from lepromatous leprosy patients and cavitary tuberculosis patients revealed that 9 of 15 recombinant hypothetical unknowns elicited M. leprae-specific immune responses. These nine proteins may be good diagnostic reagents to improve both the sensitivity and specificity of detection of individuals with asymptomatic leprosy.

Indexed as

Antigens, BacterialBacterial ProteinsGene ExpressionGene Expression ProfilingHumansImmune SeraImmunity, CellularLeprosyLymphocyte ActivationMycobacterium lepraeReal-Time Polymerase Chain ReactionRecombinant ProteinsTuberculosisAntigens, BacterialBacterial ProteinsESAT-6 antigen, Mycobacterium lepraeImmune SeraRecombinant Proteins

Identifiers

PMID23239802
PMCPMC3571279
OpenAlexW2151854052

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.