Evidence map›Paper›PMID 23239505›Full record

ArticleChemMedChem2013

Non-natural peptide triazole antagonists of HIV-1 envelope gp120.

Kantharaju Kamanna, Rachna Aneja, Caitlin Duffy, Pamela Kubinski, Diogo Rodrigo Moreira, Lauren D Bailey, Karyn McFadden, Arne Schön, Andrew Holmes, Ferit Tuzer and 3 more

Abstract read
In one paragraph

Article in ChemMedChem, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Kantharaju KamannaDepartment of Biochemistry and Molecular Biology, Drexel University College of Medicine, 245 N. 15th Street, New College Building, Room 11302, Philadelphia, PA 19102, USA.
Rachna Aneja
Caitlin Duffy
Pamela Kubinski
Diogo Rodrigo Moreira
Lauren D Bailey
Karyn McFadden
Arne Schön
Andrew Holmes
Ferit Tuzer
Mark Contarino
Ernesto Freire
Irwin M Chaiken

Funding

Understanding Envelope Function in HIV-1 Infection: The Design, Synthesis and Validation of Small Molecule HIV-1 Env InhibitorsP01GM056550 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ABRAMS, CAMERON F · 1997 to 2018
$31.2M
NIGMS NIH HHS 5P01GM056550NIGMS NIH HHS P01 GM056550
6 · The paper itself

Abstract

We investigated the derivation of non-natural peptide triazole dual receptor site antagonists of HIV-1 Env gp120 to establish a pathway for developing peptidomimetic antiviral agents. Previously we found that the peptide triazole HNG-156 [R-I-N-N-I-X-W-S-E-A-M-M-CONH(2), in which X=ferrocenyltriazole-Pro (FtP)] has nanomolar binding affinity to gp120, inhibits gp120 binding to CD4 and the co-receptor surrogate mAb 17b, and has potent antiviral activity in cell infection assays. Furthermore, truncated variants of HNG-156, typified by UM-24 (Cit-N-N-I-X-W-S-CONH(2)) and containing the critical central stereospecific (L)X-(L)W cluster, retain the functional characteristics of the parent peptide triazole. In the current work, we examined the possibility of replacing natural with unnatural residue components in UM-24 to the greatest extent possible. The analogue with the critical "hot spot" residue Trp 6 replaced with L-3-benzothienylalanine (Bta) (KR-41), as well as a completely non-natural analogue containing D-amino acid substitutions outside the central cluster (KR-42, (D)Cit-(D)N-(D)N-(D)I-X-Bta-(D)S-CONH(2)), retained the dual receptor site antagonism/antiviral activity signature. The results define differential functional roles of subdomains within the peptide triazole and provide a structural basis for the design of metabolically stable peptidomimetic inhibitors of HIV-1 Env gp120.

Indexed as

Amino Acid SequenceAnti-HIV AgentsCalorimetryHIV-1HIV Envelope Protein gp120HIV InfectionsHumansPeptidesPeptidomimeticsProtein BindingTriazolesAnti-HIV AgentsHIV Envelope Protein gp120PeptidesPeptidomimeticsTriazoles

Identifiers

PMID23239505
PMCPMC3810028

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.