Evidence map›Paper›PMID 23238289›Full record

ArticleClinical and translational gastroenterology2012

A distinct expression pattern of the long 3'-untranslated region dicer mRNA and its implications for posttranscriptional regulation in colorectal cancer.

Yasushi Hamaya, Shigeru Kuriyama, Tetsunari Takai, Ken-Ichi Yoshida, Takanori Yamada, Mitsushige Sugimoto, Satoshi Osawa, Ken Sugimoto, Hiroaki Miyajima, Shigeru Kanaoka

Open access · goldAbstract read
In one paragraph

Article in Clinical and translational gastroenterology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
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  5. Kleat: cleavage site analysis of transcriptomes.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Yasushi HamayaDepartment of Molecular Diagnosis, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Shigeru Kuriyama
Tetsunari Takai
Ken-Ichi Yoshida
Takanori Yamada
Mitsushige Sugimoto
Satoshi Osawa
Ken Sugimoto
Hiroaki Miyajima
Shigeru Kanaoka
Hamamatsu University School of Medicine · JPHamamatsu Medical Center · JPWakaba Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesReduced expression of Dicer is associated with global downregulation of microRNAs. Primary Dicer transcripts can be processed at two alternative polyadenylation sites, generating two pools of messenger RNAs (mRNAs) that carry either a long or a short 3'-untranslated regions (3'UTRs), that both encode the same Dicer protein. The short 3'UTR Dicer mRNA is not regulated by miR-103/107. The aim of this study was to investigate the expression of total Dicer mRNA, long 3'UTR Dicer mRNA, and miR-103 in colorectal cancer (CRC).

methodsPaired tumor and normal mucosal specimens were obtained from 66 patients with CRC. Real-time reverse transcription PCR of long 3'UTR Dicer mRNA, total Dicer mRNA and miR-103 was carried out using the TaqMan Expression assay and the TaqMan MicroRNA assay.

resultsThe median expression level of coding Dicer mRNA in the tumors was significantly lower than that in normal mucosa (P<0.001). There was no significant difference in expression levels of long 3'UTR Dicer mRNA between the tumors and the normal mucosa (P=0.90). The median expression ratio of long 3'UTR Dicer mRNA to total Dicer mRNA in tumors was significantly higher than in normal mucosa (P<0.001). There was no significant difference in expression levels of miR-103 between the tumors and normal mucosa (P=0.17). There was no significant correlation between clinicopathological findings, such as stage, tumor location, and histological grade and expression levels of total Dicer mRNA, long 3'UTR Dicer mRNA, or expression ratio of long 3'UTR Dicer mRNA to total Dicer mRNA.

conclusionsThese results suggest that both transcriptional and posttranscriptional dysregulation of Dicer expression may be involved in colon carcinogenesis.

Identifiers

PMID23238289
PMCPMC3412679
OpenAlexW2013604791

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.