Evidence map›Paper›PMID 23236062›Full record

ArticleJournal of virology2013

Sequencing, annotation, and characterization of the influenza ferret infectome.

Alberto J León, David Banner, Luoling Xu, Longsi Ran, Zhiyu Peng, Kang Yi, Chao Chen, Fengping Xu, Jinrong Huang, Zhen Zhao and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Host Transcriptome Analysis of Ferret Tissues Following Henipavirus Infection.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  5. Ferret Models for Henipavirus Infection.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 4 countries.

Alberto J LeónDivision of Immunology, International Institute of Infection and Immunity, Shantou University Medical College, Shantou, Guangdong, China.
David Banner
Luoling Xu
Longsi Ran
Zhiyu Peng
Kang Yi
Chao Chen
Fengping Xu
Jinrong Huang
Zhen Zhao
Zhen Lin
Stephen H S Huang
Yuan Fang
Alyson A Kelvin
Ted M Ross
Amber Farooqui
David J Kelvin
BGI Group (China) · CNUniversity Health Network · CAShantou University · CNUniversity of Toronto · CAShantou University Medical College · CNUniversity of Pittsburgh · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ferrets have become an indispensable tool in the understanding of influenza virus virulence and pathogenesis. Furthermore, ferrets are the preferred preclinical model for influenza vaccine and therapeutic testing. Here we characterized the influenza infectome during the different stages of the infectious process in ferrets with and without prior specific immunity to influenza. RNA from lung tissue and lymph nodes from infected and naïve animals was subjected to next-generation sequencing, followed by de novo data assembly and annotation of the resulting sequences; this process generated a library comprising 13,202 ferret mRNAs. Gene expression profiles during pandemic H1N1 (pdmH1N1) influenza virus infection were analyzed by digital gene expression and solid support microarrays. As expected during primary infection, innate immune responses were triggered in the lung tissue; meanwhile, in the lymphoid tissue, genes encoding antigen presentation and maturation of effector cells of adaptive immunity increased dramatically. After 5 days postinfection, the innate immune gene expression was replaced by the adaptive immune response, which correlates with viral clearance. Reinfection with homologous pandemic influenza virus resulted in a diminished innate immune response, early adaptive immune gene regulation, and a reduction in clinical severity. The fully annotated ferret infectome will be a critical aid to the understanding of the molecular events that regulate disease severity and host-influenza virus interactions among seasonal, pandemic, and highly pathogenic avian influenzas.

Indexed as

Host-Pathogen InteractionsTranscriptomeAnimalsDisease Models, AnimalFerretsInfluenza A Virus, H1N1 SubtypeLungLymph NodesMolecular Sequence DataOrthomyxoviridae InfectionsSequence Analysis, DNATime Factors

Identifiers

PMID23236062
PMCPMC3571481
OpenAlexW2086271622

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.