Evidence map›Paper›PMID 23236061›Full record

ArticleJournal of virology2013

Distinct HIV-1 escape patterns selected by cytotoxic T cells with identical epitope specificity.

Yuichi Yagita, Nozomi Kuse, Kimiko Kuroki, Hiroyuki Gatanaga, Jonathan M Carlson, Takayuki Chikata, Zabrina L Brumme, Hayato Murakoshi, Tomohiro Akahoshi, Nico Pfeifer and 12 more

Abstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. CD8Nature communications · 2023
    Article
  5. Immune escape pathways from the HBV coreFrontiers in immunology · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Observational
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Yuichi YagitaCenter for AIDS Research, Kumamoto University, Chuo-ku, Kumamoto, Japan.
Nozomi Kuse
Kimiko Kuroki
Hiroyuki Gatanaga
Jonathan M Carlson
Takayuki Chikata
Zabrina L Brumme
Hayato Murakoshi
Tomohiro Akahoshi
Nico Pfeifer
Simon Mallal
Mina John
Toyoyuki Ose
Haruki Matsubara
Ryo Kanda
Yuko Fukunaga
Kazutaka Honda
Yuka Kawashima
Yasuo Ariumi
Shinichi Oka
Katsumi Maenaka
Masafumi Takiguchi

Funding

Tennessee CFAR: Implementation of Culturally Responsive Trauma-Informed Care with Youth with HIV in Memphis, TNP30AI110527 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI John Koethe · 2015 to 2026
$27.5M
HIV-1 adaptation to HLA-restricted immune responsesR01AI060460 · NIAID · MURDOCH UNIVERSITY · PI MALLAL, SIMON ALEXANDER · 2004 to 2008
$1.3M
CIHRNIAID NIH HHS P30 AI110527NIAID NIH HHS R01 AI060460
6 · The paper itself

Abstract

Pol283-8-specific, HLA-B*51:01-restricted, cytotoxic T cells (CTLs) play a critical role in the long-term control of HIV-1 infection. However, these CTLs select for the reverse transcriptase (RT) I135X escape mutation, which may be accumulating in circulating HIV-1 sequences. We investigated the selection of the I135X mutation by CTLs specific for the same epitope but restricted by HLA-B*52:01. We found that Pol283-8-specific, HLA-B*52:01-restricted CTLs were elicited predominantly in chronically HIV-1-infected individuals. These CTLs had a strong ability to suppress the replication of wild-type HIV-1, though this ability was weaker than that of HLA-B*51:01-restricted CTLs. The crystal structure of the HLA-B*52:01-Pol283-8 peptide complex provided clear evidence that HLA-B*52:01 presents the peptide similarly to HLA-B*51:01, ensuring the cross-presentation of this epitope by both alleles. Population level analyses revealed a strong association of HLA-B*51:01 with the I135T mutant and a relatively weaker association of HLA-B*52:01 with several I135X mutants in both Japanese and predominantly Caucasian cohorts. An in vitro viral suppression assay revealed that the HLA-B*52:01-restricted CTLs failed to suppress the replication of the I135X mutant viruses, indicating the selection of these mutants by the CTLs. These results suggest that the different pattern of I135X mutant selection may have resulted from the difference between these two CTLs in the ability to suppress HIV-1 replication.

Indexed as

Immune EvasionSelection, GeneticAsian PeopleEpitopes, T-LymphocyteHIV-1HIV InfectionsHIV Reverse TranscriptaseHLA-B51 AntigenHLA-B52 AntigenHumansMutant ProteinsMutation, MissenseProtein BindingT-Lymphocytes, CytotoxicWhite PeopleEpitopes, T-LymphocyteHIV Reverse TranscriptaseHLA-B*51:01:02 antigenHLA-B51 AntigenHLA-B*52:01 antigenHLA-B52 AntigenMutant Proteinsreverse transcriptase, Human immunodeficiency virus 1

Identifiers

PMID23236061
PMCPMC3571484

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.