Evidence map›Paper›PMID 23235880›Full record

ArticleNature2012

A soybean cyst nematode resistance gene points to a new mechanism of plant resistance to pathogens.

Shiming Liu, Pramod K Kandoth, Samantha D Warren, Greg Yeckel, Robert Heinz, John Alden, Chunling Yang, Aziz Jamai, Tarik El-Mellouki, Parijat S Juvale and 7 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 199 papers.

0numbers the graph read from it
0cells of the map it votes in
199citing papers in PubMed
30.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

199 citing papers in PubMed, 401 citations in OpenAlex.

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  7. Review
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  12. Transcription FactorPlants (Basel, Switzerland) · 2025
    Article
  13. Candidate genes at the Rmi1 locus for resistance to Meloidogyne incognita in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  14. Identification of candidate genes associated with resistance to Heterodera sojae in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  15. Article
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  19. Gene Localization and Functional Validation ofPlants (Basel, Switzerland) · 2025
    Article
  20. Article

139 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Shiming LiuDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, Illinois 62901, USA.
Pramod K Kandoth
Samantha D Warren
Greg Yeckel
Robert Heinz
John Alden
Chunling Yang
Aziz Jamai
Tarik El-Mellouki
Parijat S Juvale
John Hill
Thomas J Baum
Silvia Cianzio
Steven A Whitham
Dmitry Korkin
Melissa G Mitchum
Khalid Meksem
University of Missouri · USIowa State University · USSouthern Illinois University Carbondale · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Soybean (Glycine max (L.) Merr.) is an important crop that provides a sustainable source of protein and oil worldwide. Soybean cyst nematode (Heterodera glycines Ichinohe) is a microscopic roundworm that feeds on the roots of soybean and is a major constraint to soybean production. This nematode causes more than US$1 billion in yield losses annually in the United States alone, making it the most economically important pathogen on soybean. Although planting of resistant cultivars forms the core management strategy for this pathogen, nothing is known about the nature of resistance. Moreover, the increase in virulent populations of this parasite on most known resistance sources necessitates the development of novel approaches for control. Here we report the map-based cloning of a gene at the Rhg4 (for resistance to Heterodera glycines 4) locus, a major quantitative trait locus contributing to resistance to this pathogen. Mutation analysis, gene silencing and transgenic complementation confirm that the gene confers resistance. The gene encodes a serine hydroxymethyltransferase, an enzyme that is ubiquitous in nature and structurally conserved across kingdoms. The enzyme is responsible for interconversion of serine and glycine and is essential for cellular one-carbon metabolism. Alleles of Rhg4 conferring resistance or susceptibility differ by two genetic polymorphisms that alter a key regulatory property of the enzyme. Our discovery reveals an unprecedented plant resistance mechanism against a pathogen. The mechanistic knowledge of the resistance gene can be readily exploited to improve nematode resistance of soybean, an increasingly important global crop.

Indexed as

Host-Parasite InteractionsAmino Acid SequenceAnimalsDNA Mutational AnalysisGene OrderGene SilencingGenetic Complementation TestGlycine HydroxymethyltransferaseGlycine maxHaplotypesModels, MolecularMolecular Sequence DataNematodaPlant ProteinsPolymorphism, GeneticProtein Structure, TertiaryGlycine HydroxymethyltransferasePlant Proteins

Identifiers

PMID23235880
OpenAlexW2061170799

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.