Evidence map›Paper›PMID 23235293›Full record

ArticleThe ISME journal2013

Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities.

Jessica K Cole, Joseph P Peacock, Jeremy A Dodsworth, Amanda J Williams, Daniel B Thompson, Hailiang Dong, Geng Wu, Brian P Hedlund

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 173 citations in OpenAlex.

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32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jessica K ColeSchool of Life Sciences, University of Nevada, Las Vegas, NV, USA.
Joseph P Peacock
Jeremy A Dodsworth
Amanda J Williams
Daniel B Thompson
Hailiang Dong
Geng Wu
Brian P Hedlund
University of Nevada, Las Vegas · USChina University of Geosciences · CNMiami University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Great Boiling Spring is a large, circumneutral, geothermal spring in the US Great Basin. Twelve samples were collected from water and four different sediment sites on four different dates. Microbial community composition and diversity were assessed by PCR amplification of a portion of the small subunit rRNA gene using a universal primer set followed by pyrosequencing of the V8 region. Analysis of 164 178 quality-filtered pyrotags clearly distinguished sediment and water microbial communities. Water communities were extremely uneven and dominated by the bacterium Thermocrinis. Sediment microbial communities grouped according to temperature and sampling location, with a strong, negative, linear relationship between temperature and richness at all taxonomic levels. Two sediment locations, Site A (87-80 °C) and Site B (79 °C), were predominantly composed of single phylotypes of the bacterial lineage GAL35 (\[pmacr]=36.1%), Aeropyrum (\[pmacr]=16.6%), the archaeal lineage pSL4 (\[pmacr]=15.9%), the archaeal lineage NAG1 (\[pmacr]=10.6%) and Thermocrinis (\[pmacr]=7.6%). The ammonia-oxidizing archaeon 'Candidatus Nitrosocaldus' was relatively abundant in all sediment samples <82 °C (\[pmacr]=9.51%), delineating the upper temperature limit for chemolithotrophic ammonia oxidation in this spring. This study underscores the distinctness of water and sediment communities in GBS and the importance of temperature in driving microbial diversity, composition and, ultimately, the functioning of biogeochemical cycles.

Indexed as

Water MicrobiologyAmmoniaArchaeaBacteriaGeologic SedimentsHot SpringsNevadaPhylogenyTemperatureAmmonia

Identifiers

PMID23235293
PMCPMC3605714
OpenAlexW1984865894

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.