Evidence map›Paper›PMID 23233254›Full record

ArticleInvestigative ophthalmology & visual science2013

Allele-specific siRNA silencing for the common keratin 12 founder mutation in Meesmann epithelial corneal dystrophy.

Edwin H A Allen, Sarah D Atkinson, Haihui Liao, Jonathan E Moore, Deena M Leslie Pedrioli, Frances J D Smith, W H Irwin McLean, C B Tara Moore

Abstract readComparative Study
In one paragraph

Article in Investigative ophthalmology & visual science, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 40 citations in OpenAlex.

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  4. Tribology and the Ocular Surface.Clinical ophthalmology (Auckland, N.Z.) · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Edwin H A Allen *School of Biomedical Sciences, University of Ulster, Coleraine, Northern Ireland BT52 1SA, UK.
Sarah D Atkinson *School of Biomedical Sciences, University of Ulster, Coleraine, Northern Ireland BT52 1SA, UK.
Haihui LiaoDermatology and Genetic Medicine, Colleges of Life Sciences and Medicine, Dentistry & Nursing, University of Dundee, Dundee DD1 5EH, Scotland.
Jonathan E MooreSchool of Biomedical Sciences, University of Ulster, Coleraine, Northern Ireland BT52 1SA, UK.
Deena M Leslie PedrioliDermatology and Genetic Medicine, Colleges of Life Sciences and Medicine, Dentistry & Nursing, University of Dundee, Dundee DD1 5EH, Scotland.
Frances J D SmithDermatology and Genetic Medicine, Colleges of Life Sciences and Medicine, Dentistry & Nursing, University of Dundee, Dundee DD1 5EH, Scotland.
W H Irwin McLeanDermatology and Genetic Medicine, Colleges of Life Sciences and Medicine, Dentistry & Nursing, University of Dundee, Dundee DD1 5EH, Scotland.
C B Tara MooreSchool of Biomedical Sciences, University of Ulster, Coleraine, Northern Ireland BT52 1SA, UK.
University of Ulster · GB

Funding

Medical Research Council G0801742Medical Research Council G0802780Wellcome Trust 098439
6 · The paper itself

Abstract

purposeTo identify an allele-specific short interfering RNA (siRNA), against the common KRT12 mutation Arg135Thr in Meesmann epithelial corneal dystrophy (MECD) as a personalized approach to treatment.

methodssiRNAs against the K12 Arg135Thr mutation were evaluated using a dual luciferase reporter gene assay and the most potent and specific siRNAs were further screened by Western blot. Off-target effects on related keratins were assessed and immunological stimulation of TLR3 was evaluated by RT-PCR. A modified 5' rapid amplification of cDNA ends method was used to confirm siRNA-mediated mutant knockdown. Allele discrimination was confirmed by quantitative infrared immunoblotting.

resultsThe lead siRNA, with an IC(50) of thirty picomolar, showed no keratin off-target effects or activation of TLR3 in the concentration ranges tested. We confirmed siRNA-mediated knockdown by the presence of K12 mRNA fragments cleaved at the predicted site. A dual tag infrared immunoblot showed knockdown to be allele-specific, with 70% to 80% silencing of the mutant protein.

conclusionsA potent allele-specific siRNA against the K12 Arg135Thr mutation was identified. In combination with efficient eyedrop formulation delivery, this would represent a personalized medicine approach, aimed at preventing the pathology associated with MECD and other ocular surface pathologies with dominant-negative or gain-of-function pathomechanisms.

Indexed as

Gene SilencingMutationAllelesCell Culture TechniquesCorneal Dystrophy, Juvenile Epithelial of MeesmannDNAExonsHumansKeratin-12Mutant ProteinsReverse Transcriptase Polymerase Chain ReactionRNA, Small InterferingDNAKeratin-12Mutant ProteinsRNA, Small Interfering

Identifiers

PMID23233254
PMCPMC3869971
OpenAlexW1964977418

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.