Evidence map›Paper›PMID 23232447›Full record

ArticleThe Journal of pharmacology and experimental therapeutics2013

Structure-based optimization of angiostatic agent 6DBF7, an allosteric antagonist of galectin-1.

Ruud P M Dings, Nigam Kumar, Michelle C Miller, Melissa Loren, Huzaifa Rangwala, Thomas R Hoye, Kevin H Mayo

Open access · greenAbstract read
In one paragraph

Article in The Journal of pharmacology and experimental therapeutics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. MG-International journal of molecular sciences · 2022
    Article
  9. Review
  10. Review
  11. Binding of a SolubleBiochemistry · 2020
    Article
  12. Review
  13. Targeting Galectins With Glycomimetics.Frontiers in chemistry · 2020
    Review
  14. Article
  15. Galectins as Molecular Targets for Therapeutic Intervention.International journal of molecular sciences · 2018
    Review
  16. Galectin Targeted Therapy in Oncology: Current Knowledge and Perspectives.International journal of molecular sciences · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ruud P M DingsDepartment of Biochemistry, University of Minnesota, 321 Church Street, Minneapolis, MN 55455, USA.
Nigam Kumar
Michelle C Miller
Melissa Loren
Huzaifa Rangwala
Thomas R Hoye
Kevin H Mayo
University of Minnesota · US

Funding

TRAINING GRANT IN MICROBIOLOGY/CANCER RESEARCHT32CA009138 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Scott M. Dehm · 1985 to 2026
$11.3M
Peptide Based Antiagiogenic Antitumor AgentR01CA096090 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MAYO, KEVIN H. · 2002 to 2011
$2.7M
NCI NIH HHS R01 CA-096090NCI NIH HHS R01 CA096090NCI NIH HHS T32 CA009138
6 · The paper itself

Abstract

Galectin-1 (gal-1), which binds β-galactoside groups on various cell surface receptors, is crucial to cell adhesion and migration, and is found to be elevated in several cancers. Previously, we reported on 6DBF7, a dibenzofuran (DBF)-based peptidomimetic of the gal-1 antagonist anginex. In the present study, we used a structure-based approach to optimize 6DBF7. Initial NMR studies showed that 6DBF7 binds to gal-1 on one side of the β-sandwich away from the lectin's carbohydrate binding site. Although an alanine scan of 6DBF7 showed that the two cationic groups (lysines) in the partial peptide are crucial to its angiostatic activity, it is the hydrophobic face of the amphipath that appears to interact directly with the surface of gal-1. Based on this structural information, we designed and tested additional DBF analogs. In particular, substitution of the C-terminal Asp for alanine and branched alkyl side chains (Val, Leu, Ile) for linear ones (Nle, Nva) rendered the greatest improvements in activity. Flow cytometry with gal-1(-/-) splenocytes showed that 6DBF7 and two of its more potent analogs (DB16 and DB21) can fully inhibit fluorescein isothiocyanate-gal-1 binding. Moreover, heteronuclear single-quantum coherence NMR titrations showed that the presence of DB16 decreases gal-1 affinity for lactose, indicating that the peptidomimetic targets gal-1 as a noncompetitive, allosteric inhibitor of glycan binding. Using tumor mouse models (B16F10 melanoma, LS174 lung, and MA148 ovarian), we found that DB21 inhibits tumor angiogenesis and tumor growth significantly better than 6DBF7, DB16, or anginex. DB21 is currently being developed further and holds promise for the management of human cancer in the clinic.

Indexed as

AlanineAmino Acid SequenceAngiogenesis InhibitorsAnimalsBenzofuransBinding SitesCell LineCell Line, TumorFemaleGalectin 1HumansHuman Umbilical Vein Endothelial CellsLactoseMagnetic Resonance SpectroscopyMaleMiceAlanineAngiogenesis InhibitorsBenzofuransdibenzofuranGalectin 1LactosePeptidomimetics

Identifiers

PMID23232447
PMCPMC3583509
OpenAlexW2109417043

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.