Evidence map›Paper›PMID 23232111›Full record

ArticleTuberculosis (Edinburgh, Scotland)2013

Mycobacterium tuberculosis DNA fingerprint clusters and its relationship with RD(Rio) genotype in Brazil.

Solange Alves Vinhas, Moisés Palaci, Hebert Silva Marques, Paola Poloni Lobo de Aguiar, Fabíola Karla Ribeiro, Renata Lyrio Peres, Reynaldo Dietze, Harrison Magdinier Gomes, Philip Noel Suffys, Jonathan E Golub and 2 more

Abstract read
In one paragraph

Article in Tuberculosis (Edinburgh, Scotland), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. A systematic review of East African-Indian family of Mycobacterium tuberculosis in Brazil.The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Solange Alves VinhasNúcleo de Doenças Infecciosas, Universidade Federal do Espírito Santo, Av. Marechal Campos, 1468 Maruípe, Vitória, ES, Brazil.
Moisés Palaci
Hebert Silva Marques
Paola Poloni Lobo de Aguiar
Fabíola Karla Ribeiro
Renata Lyrio Peres
Reynaldo Dietze
Harrison Magdinier Gomes
Philip Noel Suffys
Jonathan E Golub
Lee W Riley
Ethel Leonor Noia Maciel

Funding

Innovative approaches for tuberculosis control in BrazilU2RTW006883 · FIC · FEDERAL UNIVERSITY OF RIO DE JANEIRO · PI LAPA E SILVA, JOSE ROBERTO · 2005 to 2015
$3.5M
Innovative Approaches for Tuberculosis Control in BrazilU2RTW006885 · FIC · JOHNS HOPKINS UNIVERSITY · PI GOLUB, JONATHAN E. · 2005 to 2014
$2.3M
FIC NIH HHS U2R TW006883FIC NIH HHS U2R TW006885
6 · The paper itself

Abstract

Mycobacterium tuberculosis (Mtb) strains designated as RD(Rio) are responsible for a large cluster of new cases of tuberculosis (TB) in Rio de Janeiro. They were previously shown to be associated with severe manifestations of TB. Here, we used three genotyping methods (IS6110 RFLP, spoligotyping, and multiplex PCR) to characterize RD(Rio) and non-RD(Rio) strains from the metropolitan area of Vitória, State of Espirito Santo in southeast Brazil to determine strain diversity and transmission patterns. Strains with identical IS6110 RFLP patterns were considered to belong to a cluster indicative of recent transmission. Between 2000 and 2010, we identified 5470 new TB patients and genotyped 981 Mtb strains. Of these, 376 (38%) were RD(Rio). By RFLP, 180 (48%) of 376 RD(Rio) strains and 235 (40%) of 593 non-RD(Rio) strains belonged to RFLP cluster pattern groups (p = 0.023). Simpson's diversity index based on RFLP patterns was 0.96 for RD(Rio) and 0.98 for non-RD(Rio) strains. Thus, although RD(Rio) strains appear to be comprised of a fewer number of RFLP genotypes, they represent a heterogeneous group. While TB cases caused by RD(Rio) appear more likely to be due to recent transmission than cases caused by non-RD(Rio) strains, the difference is small. These observations suggest that factors other than inherent biological characteristic of RD(Rio) lineages are more important in determining recent transmission, and that public health measures to interrupt new transmissions need to be emphasized for TB control in Vitória.

Indexed as

AdultBacterial Typing TechniquesDNA, BacterialDNA FingerprintingFemaleGenotypeHumansMaleMiddle AgedMycobacterium tuberculosisPolymorphism, Restriction Fragment LengthRetrospective StudiesTuberculosis, PulmonaryDNA, Bacterial

Identifiers

PMID23232111
PMCPMC3734852

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.