Evidence map›Paper›PMID 23230273›Full record

ArticleMolecular and cellular biology2013

The yeast cap binding complex modulates transcription factor recruitment and establishes proper histone H3K36 trimethylation during active transcription.

Munshi Azad Hossain, Christina Chung, Suman K Pradhan, Tracy L Johnson

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  12. Co-transcriptional mRNP formation is coordinated within a molecular mRNP packaging station in S. cerevisiae.BioEssays : news and reviews in molecular, cellular and developmental biology · 2015
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Cap-binding complex (CBC).The Biochemical journal · 2014
    Review
  18. Article
  19. Using yeast genetics to study splicing mechanisms.Methods in molecular biology (Clifton, N.J.) · 2014
    Article
  20. Introduction to cotranscriptional RNA splicing.Methods in molecular biology (Clifton, N.J.) · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Munshi Azad HossainUniversity of California, San Diego, Division of Biological Sciences, Molecular Biology Section, La Jolla, California, USA.
Christina Chung
Suman K Pradhan
Tracy L Johnson
University of California, San Diego · USUniversity of California, Los Angeles · US

Funding

SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
Eukaryotic RNA Processing and Chromatin ModificationR01GM085474 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JOHNSON, TRACY L · 2010 to 2021
$2.6M
NIGMS NIH HHS GM085474NIGMS NIH HHS GM085764NIGMS NIH HHS P50 GM085764NIGMS NIH HHS R01 GM085474
6 · The paper itself

Abstract

Recent studies have revealed a close relationship between transcription, histone modification, and RNA processing. In fact, genome-wide analyses that correlate histone marks with RNA processing signals raise the possibility that specific RNA processing factors may modulate transcription and help to "write" chromatin marks. Here we show that the nuclear cap binding complex (CBC) directs recruitment of transcription elongation factors and establishes proper histone marks during active transcription. A directed genetic screen revealed that deletion of either subunit of the CBC confers a synthetic growth defect when combined with deletion of genes encoding either Ctk2 or Bur2, a component of the Saccharomyces cerevisiae ortholog of P-TEFb. The CBC physically associates with these complexes to recruit them during transcription and mediates phosphorylation at Ser-2 of the C-terminal domain (CTD) of RNA polymerase II. To understand how these interactions influence downstream events, histone H3K36me3 was examined, and we demonstrate that CBCΔ affects proper Set2-dependent H3K36me3. Consistent with this, the CBC and Set2 have similar effects on the ability to rapidly induce and sustain activated gene expression, and these effects are distinct from other histone methyltransferases. This work provides evidence for an emerging model that RNA processing factors can modulate the recruitment of transcription factors and influence histone modification during elongation.

Indexed as

Gene Expression Regulation, FungalCyclinsGalactokinaseGene DeletionHistonesMethylationMethyltransferasesNuclear Cap-Binding Protein ComplexPhosphorylationProtein Interaction MappingProtein KinasesRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional ActivationTranscriptional Elongation FactorsBur2 protein, S cerevisiaeCTDK-I protein complex, S cerevisiaeCyclinsGAL1 protein, S cerevisiaeGalactokinaseHistonesMethyltransferasesNuclear Cap-Binding Protein ComplexProtein KinasesRNA Polymerase IISaccharomyces cerevisiae ProteinsSet2 protein, S cerevisiaeTranscriptional Elongation Factors

Identifiers

PMID23230273
PMCPMC3571348
OpenAlexW2159885805

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.