Evidence map›Paper›PMID 23229498›Full record

ArticleMarine biotechnology (New York, N.Y.)2013

Bacterial classification of fish-pathogenic Mycobacterium species by multigene phylogenetic analyses and MALDI Biotyper identification system.

Satoru Kurokawa, Jun Kabayama, Tsuguaki Fukuyasu, Seong Don Hwang, Chan-Il Park, Seong-Bin Park, Carmelo S del Castillo, Jun-ichi Hikima, Tae-Sung Jung, Hidehiro Kondo and 3 more

Abstract read
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In one paragraph

Article in Marine biotechnology (New York, N.Y.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Mycobacterium marinum.Microbiology spectrum · 2017
    Review
  9. Article
  10. Article
  11. Evaluation of Presurgical Skin Preparation Agents in African Clawed Frogs (Xenopus laevis).Journal of the American Association for Laboratory Animal Science : JAALAS · 2015
    Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Satoru KurokawaAnimal Health Department of Research and Development Agricultural and Veterinary Division, Meiji Seika Pharma, 2-4-16, Kyobashi, Chuo-ku, Tokyo, 104-8002, Japan.
Jun Kabayama
Tsuguaki Fukuyasu
Seong Don Hwang
Chan-Il Park
Seong-Bin Park
Carmelo S del Castillo
Jun-ichi Hikima
Tae-Sung Jung
Hidehiro Kondo
Ikuo Hirono
Haruko Takeyama
Takashi Aoki

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium marinum is difficult to distinguish from other species of Mycobacterium isolated from fish using biochemical methods. Here, we used genetic and proteomic analyses to distinguish three Mycobacterium strains: M. marinum strains MB2 and Europe were isolated from tropical and marine fish in Thailand and Europe, and Mycobacterium sp. 012931 strain was isolated from yellowtail in Japan. In phylogenetic trees based on gyrB, rpoB, and Ag85B genes, Mycobacterium sp. 012931 clustered with M. marinum strains MB2 and Europe, but in trees based on 16S rRNA, hsp65, and Ag85A genes Mycobacterium sp. 012931 did not cluster with the other strains. In proteomic analyses using a Bruker matrix-assisted laser desorption ionization Biotyper, the mass profile of Mycobacterium sp. 012931 differed from the mass profiles of the other two fish M. marinum strains. Therefore, Mycobacterium sp. 012931 is similar to M. marinum but is not the same, suggesting that it could be a subspecies of M. marinum.

Indexed as

PhylogenyAmino Acid SequenceAnimalsBase SequenceCluster AnalysisDNA PrimersEuropeFishesGenes, BacterialJapanMolecular Sequence DataMycobacterium marinumSequence Analysis, DNASpecies SpecificitySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationThailandDNA Primers

Identifiers

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.