Evidence map›Paper›PMID 23228104›Full record

ArticleMolecular microbiology2013

DnaN clamp zones provide a platform for spatiotemporal coupling of mismatch detection to DNA replication.

Justin S Lenhart, Anushi Sharma, Manju M Hingorani, Lyle A Simmons

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Bacterial DNA excision repair pathways.Nature reviews. Microbiology · 2022
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Frontiers in microbiology · 2019
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. How MutS finds a needle in a haystack.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  19. Single-molecule motions and interactions in live cells reveal target search dynamics in mismatch repair.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Justin S LenhartMolecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI, USA.
Anushi Sharma
Manju M Hingorani
Lyle A Simmons
University of Michigan–Ann Arbor · USWesleyan University · US

Funding

PCNA clamp mechanisms in DNA replication and repairR15GM094047 · NIGMS · WESLEYAN UNIVERSITY · PI HINGORANI, MANJU M · 2010 to 2010
$498k
NIGMS NIH HHS R15 GM094047
6 · The paper itself

Abstract

Mismatch repair (MMR) increases the fidelity of DNA replication by identifying and correcting replication errors. Processivity clamps are vital components of DNA replication and MMR, yet the mechanism and extent to which they participate in MMR remains unclear. We investigated the role of the Bacillus subtilis processivity clamp DnaN, and found that it serves as a platform for mismatch detection and coupling of repair to DNA replication. By visualizing functional MutS fluorescent fusions in vivo, we find that MutS forms foci independent of mismatch detection at sites of replication (i.e. the replisome). These MutS foci are directed to the replisome by DnaN clamp zones that aid mismatch detection by targeting the search to nascent DNA. Following mismatch detection, MutS disengages from the replisome, facilitating repair. We tested the functional importance of DnaN-mediated mismatch detection for MMR, and found that it accounts for 90% of repair. This high dependence on DnaN can be bypassed by increasing MutS concentration within the cell, indicating a secondary mode of detection in vivo whereby MutS directly finds mismatches without associating with the replisome. Overall, our results provide new insight into the mechanism by which DnaN couples mismatch recognition to DNA replication in living cells.

Indexed as

DNA Mismatch RepairDNA ReplicationBacillus subtilisBacterial ProteinsDNA-Directed DNA PolymeraseMutS DNA Mismatch-Binding ProteinBacterial ProteinsDNA-Directed DNA PolymerasednaN protein, BacteriaMutS DNA Mismatch-Binding Protein

Identifiers

PMID23228104
PMCPMC5938748
OpenAlexW2150691069

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.