Evidence map›Paper›PMID 23224971›Full record

ReviewAdvances in experimental medicine and biology2013

Deadenylation and P-bodies.

Chyi-Ying A Chen, Ann-Bin Shyu

Open access · greenAbstract readReview
In one paragraph

Review in Advances in experimental medicine and biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Chyi-Ying A ChenDepartment of Biochemistry and Molecular Biology, The University of Texas Medical School, Houston, TX 77030, USA.
Ann-Bin Shyu
The University of Texas at Austin · US

Funding

Messenger RNA Turnover in Mammalian CellsR01GM046454 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SHYU, ANN-BIN · 1991 to 2016
$7.1M
Translational Regulation in Bronchial Epithelial CellsR01AI077679 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SHYU, ANN-BIN · 2011 to 2014
$1.5M
NIAID NIH HHS R01 AI077679NIGMS NIH HHS R01 GM046454
6 · The paper itself

Abstract

Deadenylation is the major step in triggering mRNA decay and results in mRNA translation inhibition in eukaryotic cells. Therefore, it is plausible that deadenylation also induces the mRNP remodeling required for formation of GW bodies or RNA processing bodies (P-bodies), which harbor translationally silenced mRNPs. In this chapter, we discuss several examples to illustrate the roles of deadenylation in regulating gene expression. We highlight several lines of evidence indicating that even though non-translatable mRNPs may be prepared and/or assembled into P-bodies in different ways, deadenylation is always a necessary, and perhaps the earliest, step in mRNA decay pathways that enable mRNP remodeling required for P-body formation. Thus, deadenylation and the participating deadenylases are not simply required for preparing mRNA substrates; they play an indispensable role both structurally and functionally in P-body formation and regulation.

Indexed as

RNA InterferenceAnimalsCarrier ProteinsDrosophila ProteinsExoribonucleasesGene Expression RegulationHumansMicrobodiesMicroRNAsProtein BiosynthesisRibonucleasesRibonucleoproteinsRNA, MessengerRNA StabilitySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCarrier ProteinsCCR4 protein, DrosophilaDrosophila ProteinsExoribonucleasesmessenger ribonucleoproteinMicroRNAsPAN2 protein, humanPAN3 protein, humanPOP2 protein, S cerevisiaeRibonucleasesRibonucleoproteinsRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID23224971
PMCPMC3804309
OpenAlexW33925737

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.