Evidence map›Paper›PMID 23224681›Full record

ArticlePflugers Archiv : European journal of physiology2013

MATLAB implementation of a dynamic clamp with bandwidth of >125 kHz capable of generating I Na at 37 °C.

Chris Clausen, Virginijus Valiunas, Peter R Brink, Ira S Cohen

Abstract read
In one paragraph

Article in Pflugers Archiv : European journal of physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. A study of the outward background current conductance gPflugers Archiv : European journal of physiology · 2020
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Chris ClausenDepartment of Physiology and Biophysics and Institute for Molecular Cardiology, Health Sciences Center, Stony Brook University, Stony Brook, NY 11794-8661, USA. chris.clausen@stonybrook.edu
Virginijus Valiunas
Peter R Brink
Ira S Cohen

Funding

Novel ion channel approaches to reentrant arrythymiasR01HL094410 · NHLBI · STATE UNIVERSITY NEW YORK STONY BROOK · PI COHEN, IRA S · 2009 to 2013
$3.8M
MicroRNA permeability of connexin mutants related to genetic diseaseR01GM088181 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI VALIUNAS, VIRGINIJUS · 2011 to 2020
$2.8M
From human keratinocytes to biological pacemakersR01HL111401 · NHLBI · STATE UNIVERSITY NEW YORK STONY BROOK · PI COHEN, IRA S · 2012 to 2015
$2.6M
Cardiac Optogenetics: A Cell Delivery ApproachR01HL111649 · NHLBI · STATE UNIVERSITY NEW YORK STONY BROOK · PI ENTCHEVA, EMILIA · 2012 to 2016
$2.4M
SiRNA therapeutics: Gap junction delivery in vitro and in vivoR01GM088180 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI BRINK, PETER R, COHEN, IRA S · 2010 to 2013
$1.6M
NHLBI NIH HHS HL-094410NHLBI NIH HHS HL-111401NHLBI NIH HHS HL-11164NHLBI NIH HHS R01 HL094410NHLBI NIH HHS R01 HL111401NHLBI NIH HHS R01 HL111649NIGMS NIH HHS GM-088181NIGMS NIH HHS R01 GM088180NIGMS NIH HHS R01 GM088181
6 · The paper itself

Abstract

We describe the construction of a dynamic clamp with a bandwidth of >125 kHz that utilizes a high-performance, yet low-cost, standard home/office PC interfaced with a high-speed (16 bit) data acquisition module. High bandwidth is achieved by exploiting recently available software advances (code-generation technology and optimized real-time kernel). Dynamic-clamp programs are constructed using Simulink, a visual programming language. Blocks for computation of membrane currents are written in the high-level MATLAB language; no programming in C is required. The instrument can be used in single- or dual-cell configurations, with the capability to modify programs while experiments are in progress. We describe an algorithm for computing the fast transient Na(+) current (I Na) in real time and test its accuracy and stability using rate constants appropriate for 37 °C. We then construct a program capable of supplying three currents to a cell preparation: I Na, the hyperpolarizing-activated inward pacemaker current (I f) and an inward-rectifier K(+) current (I K1). The program corrects for the IR drop due to electrode current flow and also records all voltages and currents. We tested this program on dual patch-clamped HEK293 cells where the dynamic clamp controls a current-clamp amplifier and a voltage-clamp amplifier controls membrane potential, and current-clamped HEK293 cells where the dynamic clamp produces spontaneous pacing behavior exhibiting Na(+) spikes in otherwise passive cells.

Indexed as

Action PotentialsHot TemperatureAlgorithmsHEK293 CellsHumansIon TransportMembrane PotentialsPatch-Clamp TechniquesPotassiumSodiumPotassiumSodium

Identifiers

PMID23224681
PMCPMC3626758

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.