Evidence map›Paper›PMID 23224381›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2013

QTL involved in the modification of cyanidin compounds in black and red raspberry fruit.

J M Bushakra, C Krieger, D Deng, M J Stephens, A C Allan, R Storey, V V Symonds, D Stevenson, T McGhie, D Chagné and 2 more

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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Inheritance and QTL analysis of the determinants of flower color in tetraploid cut roses.Molecular breeding : new strategies in plant improvement · 2016
    Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

J M BushakraThe New Zealand Institute for Plant & Food Research Limited (PFR), Batchelar Road, Private Bag 11600, Palmerston North, 4442, New Zealand. Jill.Bushakra@ars.usda.gov
C Krieger
D Deng
M J Stephens
A C Allan
R Storey
V V Symonds
D Stevenson
T McGhie
D Chagné
E J Buck
S E Gardiner
Plant & Food Research · NZMassey University · NZMt Albert Primary School · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fruit from Rubus species are highly valued for their flavor and nutritive qualities. Anthocyanin content contributes to these qualities, and although many studies have been conducted to identify and quantify the major anthocyanin compounds from various Rubus species, the genetic control of the accumulation of these complex traits in Rubus is not yet well understood. The identification of the regions of the genome involved in the production of anthocyanins is an important first step in identifying the genes underlying their expression. In this study, ultra and high-performance liquid chromatography (UHPLC and HPLC) and two newly developed Rubus linkage maps were used to conduct QTL analyses to explore the presence of associations between concentrations of five anthocyanins in fruit and genotype. In total, 27 QTL were identified on the Rubus linkage maps, four of which are associated with molecular markers designed from transcription factors and three of which are associated with molecular markers designed from anthocyanin biosynthetic pathway candidate genes. The results of this study suggest that, while QTL for anthocyanin accumulation have been identified on six of seven Rubus linkage groups (RLG), the QTL on RLG2 and RLG7 may be very important for genetic control of cyanidin modification in Rubus.

Indexed as

Genes, PlantQuantitative Trait LociAnthocyaninsChromatography, High Pressure LiquidChromosome MappingEpistasis, GeneticFruitGenetic LinkageGenetic MarkersPhenotypeRosaceaeTranscription FactorsAnthocyaninscyanidinGenetic MarkersTranscription Factors

Identifiers

PMID23224381
OpenAlexW2040136799

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.