Evidence map›Paper›PMID 23223973›Full record

ArticleChromosoma2013

Maize chromosomal knobs are located in gene-dense areas and suppress local recombination.

Rashin Ghaffari, Ethalinda K S Cannon, Lisa B Kanizay, Carolyn J Lawrence, R Kelly Dawe

Abstract read
In one paragraph

Article in Chromosoma, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Maize B chromosome affects the flowering time.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
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  7. Review
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  11. The maize abnormal chromosome 10 meiotic drive haplotype: a review.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2022
    Review
  12. Modeling the 3D genome of plants.Nucleus (Austin, Tex.) · 2021
    Article
  13. Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rashin GhaffariDepartment of Plant Biology, University of Georgia, Athens, GA, USA.
Ethalinda K S Cannon
Lisa B Kanizay
Carolyn J Lawrence
R Kelly Dawe

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Knobs are conspicuous heterochromatic regions found on the chromosomes of maize and its relatives. The number, locations, and sizes of knobs vary dramatically, with most lines containing between four and eight knobs in mid-arm positions. Prior data suggest that some knobs may reduce recombination. However, comprehensive tests have not been carried out, primarily because most knobs have not been placed on the genetic map. We used fluorescent in situ hybridization and two recombinant inbred populations to map seven knobs and to accurately place three knobs from the B73 inbred on the genomic sequence assembly. The data show that knobs lie in gene-dense regions of the maize genome. Comparisons to 23 other recombinant inbred populations segregating for knobs at the same sites confirm that large knobs can locally reduce crossing over by as much as twofold on a cM/Mb scale. These effects do not extend beyond regions ~10 cM to either side of knobs and do not appear to affect linkage disequilibrium among genes within and near knob repeat regions of the B73 RefGen_v2 assembly.

Indexed as

Recombination, GeneticChromosomes, PlantDNA, PlantHeterochromatinIn Situ Hybridization, FluorescenceZea maysDNA, PlantHeterochromatin

Identifiers

PMID23223973
PMCPMC3608884

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.