ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2013
Quantitative trait loci mapping in Brassica rapa revealed the structural and functional conservation of genetic loci governing morphological and yield component traits in the A, B, and C subgenomes of Brassica species.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 63 citations in OpenAlex.
- A naturally occurring promoter variation ofFrontiers in plant science · 2025Article
- Influence of Genotype on High Glucosinolate Synthesis Lines ofInternational journal of molecular sciences · 2021Article
- Combination of genetic analysis and ancient literature survey reveals the divergence of traditional Brassica rapa varieties from Kyoto, Japan.Horticulture research · 2021Article
- Fine Mapping and Candidate Gene Identification for theFrontiers in plant science · 2021Article
- Quantitative Trait Locus Mapping of Clubroot Resistance andInternational journal of molecular sciences · 2020Article
- Different copies of SENSITIVITY TO RED LIGHT REDUCED 1 show strong subfunctionalization in Brassica napus.BMC plant biology · 2019Article
- Transcriptomic analysis of contrasting inbred lines and FGenes & genomics · 2019Article
- Identification and validation of major and minor QTLs controlling seed coat color inBreeding science · 2019Article
- Root enhancement in cytokinin-deficient oilseed rape causes leaf mineral enrichment, increases the chlorophyll concentration under nutrient limitation and enhances the phytoremediation capacity.BMC plant biology · 2019Article
- Integrated analysis of leaf morphological and color traits in different populations of Chinese cabbage (Brassica rapa ssp. pekinensis).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- A GLABRA1 ortholog on LG A9 controls trichome number in the Japanese leafy vegetables Mizuna and Mibuna (Brassica rapa L. subsp. nipposinica L. H. Bailey): evidence from QTL analysis.Journal of plant research · 2017Article
- Genetic dissection of seed weight by QTL analysis and detection of allelic variation in Indian and east European gene pool lines of Brassica juncea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Flowering Time Gene Variation inFrontiers in plant science · 2017Article
- Genome-Wide Association Study Reveals Candidate Genes for Control of Plant Height, Branch Initiation Height and Branch Number in Rapeseed (Frontiers in plant science · 2017Article
- The Genetic Linkage Map of the Medicinal Mushroom Agaricus subrufescens Reveals Highly Conserved Macrosynteny with the Congeneric Species Agaricus bisporus.G3 (Bethesda, Md.) · 2016Article
- Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes.BMC genomics · 2016Article
- Quantitative Trait Loci for Morphological Traits and their Association with Functional Genes in Raphanus sativus.Frontiers in plant science · 2016Article
- Development of gene-based markers for use in construction of the chickpea (Cicer arietinum L.) genetic linkage map and identification of QTLs associated with seed weight and plant height.Molecular biology reports · 2015Article
- Diverse regulatory factors associate with flowering time and yield responses in winter-type Brassica napus.BMC genomics · 2015Article
- Quantitative trait loci mapping of partial resistance to Diamondback moth in cabbage (Brassica oleracea L).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
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Authors and funding
8 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Brassica rapa is an important crop species that produces vegetables, oilseed, and fodder. Although many studies reported quantitative trait loci (QTL) mapping, the genes governing most of its economically important traits are still unknown. In this study, we report QTL mapping for morphological and yield component traits in B. rapa and comparative map alignment between B. rapa, B. napus, B. juncea, and Arabidopsis thaliana to identify candidate genes and conserved QTL blocks between them. A total of 95 QTL were identified in different crucifer blocks of the B. rapa genome. Through synteny analysis with A. thaliana, B. rapa candidate genes and intronic and exonic single nucleotide polymorphisms in the parental lines were detected from whole genome resequenced data, a few of which were validated by mapping them to the QTL regions. Semi-quantitative reverse transcriptase PCR analysis showed differences in the expression levels of a few genes in parental lines. Comparative mapping identified five key major evolutionarily conserved crucifer blocks (R, J, F, E, and W) harbouring QTL for morphological and yield components traits between the A, B, and C subgenomes of B. rapa, B. juncea, and B. napus. The information of the identified candidate genes could be used for breeding B. rapa and other related Brassica species.
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