Evidence map›Paper›PMID 23223230›Full record

ArticleThe Journal of biological chemistry2013

Zinc-dependent regulation of the Adh1 antisense transcript in fission yeast.

Kate M Ehrensberger, Carter Mason, Mark E Corkins, Cole Anderson, Natalie Dutrow, Bradley R Cairns, Brian Dalley, Brett Milash, Amanda J Bird

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Zinc homeostasis in Schizosaccharomyces pombe.Archives of microbiology · 2023
    Review
  4. Zinc homeostasis in the secretory pathway in yeast.Current opinion in chemical biology · 2020
    Review
  5. Transcription factors and transporters in zinc homeostasis: lessons learned from fungi.Critical reviews in biochemistry and molecular biology · 2020
    Review
  6. Article
  7. Zinc-dependent activation of the Pho8 alkaline phosphatase inThe Journal of biological chemistry · 2019
    Article
  8. The cellular economy of the Saccharomyces cerevisiae zinc proteome.Metallomics : integrated biometal science · 2018
    Article
  9. Article
  10. Article
  11. Article
  12. Zinc sensing and regulation in yeast model systems.Archives of biochemistry and biophysics · 2016
    Review
  13. Review
  14. Article
  15. Article
  16. RNAi function, diversity, and loss in the fungal kingdom.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2013
    Review
  17. Zinc finger protein Loz1 is required for zinc-responsive regulation of gene expression in fission yeast.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Kate M EhrensbergerDepartment of Molecular Genetics, The Ohio State University, Columbus, Ohio 43210, USA.
Carter Mason
Mark E Corkins
Cole Anderson
Natalie Dutrow
Bradley R Cairns
Brian Dalley
Brett Milash
Amanda J Bird
The Ohio State University · USUniversity of Utah · USHuntsman Cancer Institute · US

Funding

SPORE Leukemia Tissue BankP50CA140158 · NCI · OHIO STATE UNIVERSITY · PI BLOOMFIELD, CLARA D · 2009 to 2013
$11.2M
REGULATION OF CELLULAR ZINC HOMEOSTASISR01GM056285 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI EIDE, DAVID J · 1997 to 2022
$6.2M
NCI NIH HHS CA140158NCI NIH HHS P50 CA140158NIGMS NIH HHS R01 GM056285
6 · The paper itself

Abstract

In yeast, Adh1 (alcohol dehydrogenase 1) is an abundant zinc-binding protein that is required for the conversion of acetaldehyde to ethanol. Through transcriptome profiling of the Schizosaccharomyces pombe genome, we identified a natural antisense transcript at the adh1 locus that is induced in response to zinc limitation. This antisense transcript (adh1AS) shows a reciprocal expression pattern to that of the adh1 mRNA partner. In this study, we show that increased expression of the adh1AS transcript in zinc-limited cells is necessary for the repression of adh1 gene expression and that the increased level of the adh1AS transcript in zinc-limited cells is a result of two mechanisms. At the transcriptional level, the adh1AS transcript is expressed at a high level in zinc-limited cells. In addition to this transcriptional control, adh1AS transcripts preferentially accumulate in zinc-limited cells when the adh1AS transcript is expressed from a constitutive promoter. This secondary mechanism requires the simultaneous expression of adh1. Our studies reveal how multiple mechanisms can synergistically control the ratio of sense to antisense transcripts and highlight a novel mechanism by which adh1 gene expression can be controlled by cellular zinc availability.

Indexed as

Genes, FungalAlcohol DehydrogenaseGene Expression Regulation, EnzymologicGene Expression Regulation, FungalPolymerase Chain ReactionRNA, AntisenseRNA, MessengerSchizosaccharomycesTranscriptomeZincAlcohol DehydrogenaseRNA, AntisenseRNA, MessengerZinc

Identifiers

PMID23223230
PMCPMC3543025
OpenAlexW2034607402

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.