Evidence map›Paper›PMID 23223228›Full record

ArticleThe Journal of biological chemistry2013

The viroporin activity of the minor structural proteins VP2 and VP3 is required for SV40 propagation.

Kristina M Giorda, Smita Raghava, Macy W Zhang, Daniel N Hebert

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Biology of Polyomavirus miRNA.Frontiers in microbiology · 2021
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Nuclear entry of DNA viruses.Frontiers in microbiology · 2015
    Review
  14. Article
  15. Review
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kristina M GiordaDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, Massachusetts 01003, USA.
Smita Raghava
Macy W Zhang
Daniel N Hebert
University of Massachusetts Amherst · US

Funding

CHEMISTRY-BIOLOGY INTERFACE PREDOCTORAL TRAINING GRANTST32GM008515 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI THOMPSON, LYNMARIE K. · 1995 to 2020
$4.3M
Simian Virus 40 (SV40) uncoating and penetrationR21AI078142 · NIAID · UNIVERSITY OF MASSACHUSETTS AMHERST · PI HEBERT, DANIEL N. · 2008 to 2009
$422k
NIAID NIH HHS AI078142NIAID NIH HHS R21 AI078142NIGMS NIH HHS T32GM00815NIGMS NIH HHS T32 GM008515
6 · The paper itself

Abstract

For nonenveloped viruses such as Simian Virus 40, the mechanism used to translocate viral components across membranes is poorly understood. Previous results indicated that the minor structural proteins, VP2 and VP3, might act as membrane proteins during infection. Here, purified VP2 and VP3 were found to form pores in host cell membranes. To identify possible membrane domains, individual hydrophobic domains from VP2 and VP3 were expressed in a model protein and tested for their ability to integrate into membranes. Several domains from the late proteins supported endoplasmic reticulum membrane insertion as transmembrane domains. Mutations in VP2 and VP3 were engineered that inhibited membrane insertion and pore formation. When these mutations were introduced into the viral genome, viral propagation was inhibited. This comprehensive approach revealed that the viroporin activity of VP2 and VP3 was inhibited by targeted disruptions of individual hydrophobic domains and the loss of membrane disruption activity impaired viral infection.

Indexed as

Genes, vpuAnimalsCapsid ProteinsChlorocebus aethiopsCOS CellsGenome, ViralGlutathione TransferaseHuman Immunodeficiency Virus ProteinsMembrane ProteinsModels, BiologicalMutationPlasmidsProtein EngineeringProtein Structure, TertiarySimian virus 40Viral Regulatory and Accessory ProteinsCapsid ProteinsGlutathione TransferaseHuman Immunodeficiency Virus ProteinsMembrane ProteinsViral Regulatory and Accessory ProteinsViroporin ProteinsVp2 protein, simian virus 40VP3 protein, Simian virus 40vpu protein, Human immunodeficiency virus 1

Identifiers

PMID23223228
PMCPMC3554919
OpenAlexW1979830165

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.