Evidence map›Paper›PMID 23223016›Full record

SynthesisHuman molecular genetics2013

A pathway-based analysis provides additional support for an immune-related genetic susceptibility to Parkinson's disease.

Peter Holmans, Valentina Moskvina, Lesley Jones, Manu Sharma, International Parkinson's Disease Genomics Consortium, Alexey Vedernikov, Finja Buchel, Mohamad Saad, Mohamad Sadd, Jose M Bras and 21 more

Erratum issuedOpen access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Human molecular genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 73 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed, 5 pooled it
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 5 syntheses or guidelines pooled it, 139 citations in OpenAlex.

  1. Pooled it
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  5. Pooled it
  6. Genome-Scale Expression Pattern of Long Non-Coding RNAs in Chinese Uyghur Patients with Parkinson's Disease.Medical science monitor : international medical journal of experimental and clinical research · 2020
    Trial
  7. Article
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  10. Lysosomal storage, impaired autophagy and innate immunity in Gaucher and Parkinson's diseases: insights for drug discovery.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
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13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
    Sadd, Mohamad [corrected to Saad, Mohamad]
5 · Who and what money

Authors and funding

31 authors at 10 institutions in 9 countries.

Peter HolmansDepartment of Psychological Medicine and Neurology, Institute of Psychological Medicine and Clinical Neurosciences, MRC Centre in Neuropsychiatric Genetics and Genomics, Cardiff University School of Medicine, Cardiff CF14 4XN, UK.
Valentina Moskvina
Lesley Jones
Manu Sharma
International Parkinson's Disease Genomics Consortium
Alexey Vedernikov
Finja Buchel
Mohamad Saad
Mohamad Sadd
Jose M Bras
Francesco Bettella
Nayia Nicolaou
Javier Simón-Sánchez
Florian Mittag
J Raphael Gibbs
Claudia Schulte
Alexandra Durr
Rita Guerreiro
Dena Hernandez
Alexis Brice
Hreinn Stefánsson
Kari Majamaa
Thomas Gasser
Peter Heutink
Nicholas W Wood
Maria Martinez
Andrew B Singleton
Michael A Nalls
John Hardy
Huw R Morris
Nigel M Williams
Cardiff University · GBNational Institutes of Health · USNeuroscience Institute · ITGerman Center for Neurodegenerative Diseases · DEAmsterdam UMC Location Vrije Universiteit Amsterdam · NLCentre National de la Recherche Scientifique · FRdeCODE Genetics (Iceland) · ISUniversité Toulouse III - Paul Sabatier · FRShanghai Center For Bioinformation Technology · CNUniversity of Oulu · FI

Funding

INVESTIGATIONS OF DEMENTIA IN PARKINSON DISEASER01NS075321 · NINDS · WASHINGTON UNIVERSITY · PI CAMPBELL, MEGHAN C, PERLMUTTER, JOEL SYNES · 2011 to 2021
$8.2M
Prospective studies on Parkinson's diseaseZIAES101986 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI CHEN, HONGLEI · 2009 to 2016
$7.9M
MECHANISMS OF DEEP BRAIN STIMULATIONR01NS041509 · NINDS · WASHINGTON UNIVERSITY · PI PERLMUTTER, JOEL SYNES · 2001 to 2015
$6.8M
Genome wide SNP analysis in Parkinson's diseaseZ01AG000949 · NIA · NATIONAL INSTITUTE ON AGING · PI SINGLETON, ANDREW B · 2006 to 2008
$2.6M
Genetic Analysis Of Alzheimer's DiseaseZ01AG000950 · NIA · NATIONAL INSTITUTE ON AGING · PI SINGLETON, ANDREW · 2002 to 2008
$1.0M
Intramural NIH HHS Z01 AG000949Intramural NIH HHS Z01 AG000950Medical Research Council G0700943Medical Research Council G0802462Medical Research Council G1100479Medical Research Council G1100643Medical Research Council MC_G0901330Medical Research Council MC_G1000735Medical Research Council MC_PC_09003NIA NIH HHS Z01 AG000949-06NIA NIH HHS Z01 AG000950-10NINDS NIH HHS R01 NS041509NINDS NIH HHS R01 NS075321Parkinson's UK G-0909Parkinson's UK J-0901Parkinson's UK K-0906Wellcome Trust
6 · The paper itself

Abstract

Parkinson's disease (PD) is the second most common neurodegenerative disease affecting 1-2% in people >60 and 3-4% in people >80. Genome-wide association (GWA) studies have now implicated significant evidence for association in at least 18 genomic regions. We have studied a large PD-meta analysis and identified a significant excess of SNPs (P < 1 × 10(-16)) that are associated with PD but fall short of the genome-wide significance threshold. This result was independent of variants at the 18 previously implicated regions and implies the presence of additional polygenic risk alleles. To understand how these loci increase risk of PD, we applied a pathway-based analysis, testing for biological functions that were significantly enriched for genes containing variants associated with PD. Analysing two independent GWA studies, we identified that both had a significant excess in the number of functional categories enriched for PD-associated genes (minimum P = 0.014 and P = 0.006, respectively). Moreover, 58 categories were significantly enriched for associated genes in both GWA studies (P < 0.001), implicating genes involved in the 'regulation of leucocyte/lymphocyte activity' and also 'cytokine-mediated signalling' as conferring an increased susceptibility to PD. These results were unaltered by the exclusion of all 178 genes that were present at the 18 genomic regions previously reported to be strongly associated with PD (including the HLA locus). Our findings, therefore, provide independent support to the strong association signal at the HLA locus and imply that the immune-related genetic susceptibility to PD is likely to be more widespread in the genome than previously appreciated.

Indexed as

Metabolic Networks and PathwaysAllelesGenetic Predisposition to DiseaseGenome-Wide Association StudyHLA AntigensHumansParkinson DiseasePolymorphism, Single NucleotideRiskHLA Antigens

Identifiers

PMID23223016
PMCPMC3561909
OpenAlexW2151477002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.