Evidence map›Paper›PMID 23222724›Full record

ArticleJournal of bacteriology2013

Ferric-pyoverdine recognition by Fpv outer membrane proteins of Pseudomonas protegens Pf-5.

Sierra L Hartney, Sylvie Mazurier, Maëva K Girard, Samina Mehnaz, Edward W Davis, Harald Gross, Philippe Lemanceau, Joyce E Loper

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Functional and Genomic Characterization ofPlants (Basel, Switzerland) · 2026
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  11. Cefiderocol: An Overview of ItsFrontiers in medicine · 2021
    Review
  12. Hierarchical routing in carbon metabolism favors iron-scavenging strategy in iron-deficient soilProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Article
  14. The biosynthesis of pyoverdines.Microbial cell (Graz, Austria) · 2018
    Review
  15. Article
  16. Article
  17. PvdN Enzyme Catalyzes a Periplasmic Pyoverdine Modification.The Journal of biological chemistry · 2016
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 4 countries.

Sierra L HartneyDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Sylvie Mazurier
Maëva K Girard
Samina Mehnaz
Edward W Davis
Harald Gross
Philippe Lemanceau
Joyce E Loper
Agricultural Research Service · USAgroécologie · FRUniversity of Bonn · DEForman Christian College · PKOregon State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The soil bacterium Pseudomonas protegens Pf-5 (previously called P. fluorescens Pf-5) produces two siderophores, enantio-pyochelin and a compound in the large and diverse pyoverdine family. Using high-resolution mass spectroscopy, we determined the structure of the pyoverdine produced by Pf-5. In addition to producing its own siderophores, Pf-5 also utilizes ferric complexes of some pyoverdines produced by other strains of Pseudomonas spp. as sources of iron. Previously, phylogenetic analysis of the 45 TonB-dependent outer membrane proteins in Pf-5 indicated that six are in a well-supported clade with ferric-pyoverdine receptors (Fpvs) from other Pseudomonas spp. We used a combination of phylogenetics, bioinformatics, mutagenesis, pyoverdine structural determinations, and cross-feeding bioassays to assign specific ferric-pyoverdine substrates to each of the six Fpvs of Pf-5. We identified at least one ferric-pyoverdine that was taken up by each of the six Fpvs of Pf-5. Functional redundancy of the Pf-5 Fpvs was also apparent, with some ferric-pyoverdines taken up by all mutants with a single Fpv deletion but not by a mutant having deletions in two of the Fpv-encoding genes. Finally, we demonstrated that phylogenetically related Fpvs take up ferric complexes of structurally related pyoverdines, thereby establishing structure-function relationships that can be employed in the future to predict the pyoverdine substrates of Fpvs in other Pseudomonas spp.

Indexed as

Bacterial Outer Membrane ProteinsBiological AssayComputational BiologyGene DeletionGene Expression Regulation, BacterialIronMass SpectrometryModels, MolecularMutagenesisOligopeptidesPhylogenyProtein ConformationPseudomonasSequence AlignmentSubstrate SpecificityBacterial Outer Membrane ProteinsIronOligopeptidespyoverdin

Identifiers

PMID23222724
PMCPMC3562110
OpenAlexW2168758997

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.