ArticleDatabase : the journal of biological databases and curation2012
Building an efficient curation workflow for the Arabidopsis literature corpus.
Article in Database : the journal of biological databases and curation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- GeneReL: a large language model-powered platform for gene regulatory relationship extraction with community curation.Database : the journal of biological databases and curation · 2026Article
- The Arabidopsis Information Resource in 2024.Genetics · 2024Article
- Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).PLoS computational biology · 2021Article
- Proxies of CRISPR/Cas9 Activity To Aid in the Identification of Mutagenized Arabidopsis Plants.G3 (Bethesda, Md.) · 2020Article
- An effective biomedical document classification scheme in support of biocuration: addressing class imbalance.Database : the journal of biological databases and curation · 2019Article
- Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature.BMC bioinformatics · 2018Article
- GOTA: GO term annotation of biomedical literature.BMC bioinformatics · 2015Article
- In Silico Analysis of Correlations between Protein Disorder and Post-Translational Modifications in Algae.International journal of molecular sciences · 2015Article
- The Arabidopsis information resource: Making and mining the "gold standard" annotated reference plant genome.Genesis (New York, N.Y. : 2000) · 2015Article
- Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes.Plant & cell physiology · 2015Article
- A method for increasing expressivity of Gene Ontology annotations using a compositional approach.BMC bioinformatics · 2014Article
- BC4GO: a full-text corpus for the BioCreative IV GO task.Database : the journal of biological databases and curation · 2014Article
- Manually curated database of rice proteins.Nucleic acids research · 2014Article
- RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary.Plant & cell physiology · 2014Article
- Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing.Database : the journal of biological databases and curation · 2014Article
- Overview of the gene ontology task at BioCreative IV.Database : the journal of biological databases and curation · 2014Article
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4 authors.
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Abstract
TAIR (The Arabidopsis Information Resource) is the model organism database (MOD) for Arabidopsis thaliana, a model plant with a literature corpus of about 39 000 articles in PubMed, with over 4300 new articles added in 2011. We have developed a literature curation workflow incorporating both automated and manual elements to cope with this flood of new research articles. The current workflow can be divided into two phases: article selection and curation. Structured controlled vocabularies, such as the Gene Ontology and Plant Ontology are used to capture free text information in the literature as succinct ontology-based annotations suitable for the application of computational analysis methods. We also describe our curation platform and the use of text mining tools in our workflow. Database URL: www.arabidopsis.org
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