Evidence map›Paper›PMID 23220500›Full record

ArticleHuman immunology2013

Differential effects of a common splice site polymorphism on the generation of OAS1 variants in human bronchial epithelial cells.

Satoshi Noguchi, Emi Hamano, Ikumi Matsushita, Minako Hijikata, Hideyuki Ito, Takahide Nagase, Naoto Keicho

Abstract read
In one paragraph

Article in Human immunology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. The FunctionalInternational journal of molecular sciences · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Single nucleotide variants in theFrontiers in cellular and infection microbiology · 2024
    Observational
  8. The Many Faces of Oligoadenylate Synthetases.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. 2-5A-Mediated decay (2-5AMD): from antiviral defense to control of host RNA.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Satoshi NoguchiDepartment of Respiratory Diseases, Research Institute, National Center for Global Health and Medicine, Tokyo 162-8655, Japan.
Emi Hamano
Ikumi Matsushita
Minako Hijikata
Hideyuki Ito
Takahide Nagase
Naoto Keicho

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 2',5'-oligoadenylate synthetase 1 (OAS1) is one of the major interferon-inducible proteins and a critical component of the host defense system against viral infection. A single nucleotide polymorphism (SNP), rs10774671, presumably responsible for alternate splicing of this gene, has frequently been associated with a variety of viral diseases, including emerging respiratory infections. We investigated the SNP-dependent expression of OAS1 variants in primary cultured human bronchial epithelial cells. Total RNA was subjected to real-time RT-PCR with specific primer sets designed to amplify each transcript variant. We found that the p46 transcript was mainly expressed in cells with the GG genotype, whereas the p42 transcript was highly expressed, and the p44a (alternate exon in intron 5), p48, and p52 transcripts were expressed to a lesser extent, in cells with the AA genotype. Immunoblot analysis revealed that the p46 isoform and a smaller amount of the p42 isoform were present in cells with the GG genotype, whereas only the p42 isoform was clearly observed in cells with the AA genotype. Cellular DNA fragmentation induced by neutrophil elastase was more preferentially found in cells with the AA genotype. Thus, our findings provide insights into the potential role of OAS1 polymorphisms in respiratory infection.

Indexed as

Polymorphism, Single Nucleotide2',5'-Oligoadenylate SynthetaseAlternative SplicingBronchiCells, CulturedEpithelial CellsGene Expression Regulation, EnzymologicGenotypeHumansImmunoblottingInterferon-betaIsoenzymesReverse Transcriptase Polymerase Chain ReactionRNA Splice SitesTranscription, Genetic2',5'-Oligoadenylate SynthetaseInterferon-betaIsoenzymesOAS1 protein, humanRNA Splice Sites

Identifiers

PMID23220500
PMCPMC7115495

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.