Evidence map›Paper›PMID 23219468›Full record

ArticleJournal of molecular biology2013

Substrate recognition of PLCγ1 via a specific docking surface on Itk.

Qian Xie, Raji E Joseph, D Bruce Fulton, Amy H Andreotti

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  5. Review
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  7. Lipid-targeting pleckstrin homology domain turns its autoinhibitory face toward the TEC kinases.Proceedings of the National Academy of Sciences of the United States of America · 2019
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  14. Partial defects of T-cell development associated with poor T-cell function.The Journal of allergy and clinical immunology · 2013
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Qian XieRoy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA 50011, USA.
Raji E Joseph
D Bruce Fulton
Amy H Andreotti
Iowa State University · US

Funding

STRUCTURAL STUDIES OF A T CELL SPECIFIC TYROSINE KINASER01AI043957 · NIAID · IOWA STATE UNIVERSITY · PI AMY H ANDREOTTI, LESLIE JOAN BERG · 1999 to 2026
$9.5M
Regulation of T Cell Signaling: Structural Studies of PLCgamma1R01AI075150 · NIAID · IOWA STATE UNIVERSITY · PI ANDREOTTI, AMY H · 2008 to 2012
$1.6M
NIAID NIH HHS AI043957NIAID NIH HHS AI075150NIAID NIH HHS R01 AI043957NIAID NIH HHS R01 AI075150
6 · The paper itself

Abstract

Itk (interleukin-2 inducible T cell kinase) is a non-receptor protein tyrosine kinase expressed primarily in T cells. Itk catalyzes phosphorylation on tyrosine residues within a number of its natural substrates, including the well-characterized Y783 of PLCγ1. However, the molecular mechanisms Itk exploits to recognize its substrates are not completely understood. We have previously identified a specific docking interaction between the kinase domain of Itk and the C-terminal Src homology 2 (SH2C) domain of PLCγ1 that promotes substrate specificity for this enzyme/substrate pair. In the current study, we identify and map the interaction surface on the Itk kinase domain as an acidic patch centered on the G helix. Mutation of the residues on and adjacent to the G helix within the Itk kinase domain impairs the catalytic efficacy of PLCγ1 substrate phosphorylation by specifically altering the protein-protein interaction interface and not the inherent catalytic activity of Itk. NMR titration experiments using a Btk (Bruton's tyrosine kinase) kinase domain as a surrogate for the Itk kinase domain provide further support for an Itk/PLCγ1 SH2C interaction surrounding the G helix of the kinase domain. The work presented here provides structural insight into how the Itk kinase uses the G helix to single out Y783 of PLCγ1 for specific phosphorylation. Comparing these results to other well-characterized kinase/substrate systems suggests that the G helix is a general structural feature used by kinases for substrate recognition during signaling.

Indexed as

Protein Structure, TertiaryAgammaglobulinaemia Tyrosine KinaseAmino Acid SequenceAnimalsBinding SitesBiocatalysisBlotting, WesternKineticsMagnetic Resonance SpectroscopyMiceModels, MolecularMolecular Sequence DataMutationPeptidesPhospholipase C gammaPhosphorylationAgammaglobulinaemia Tyrosine KinaseBtk protein, mouseemt protein-tyrosine kinasePeptidesPhospholipase C gammaProtein-Tyrosine KinasesTyrosine

Identifiers

PMID23219468
PMCPMC3880187
OpenAlexW2018187824

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.