Evidence map›Paper›PMID 23217329›Full record

ArticleAmerican journal of human genetics2012

Identification of mutations in TMEM5 and ISPD as a cause of severe cobblestone lissencephaly.

Sandrine Vuillaumier-Barrot, Céline Bouchet-Séraphin, Malika Chelbi, Louise Devisme, Samuel Quentin, Steven Gazal, Annie Laquerrière, Catherine Fallet-Bianco, Philippe Loget, Sylvie Odent and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed, 3 pooled it
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 3 syntheses or guidelines pooled it, 139 citations in OpenAlex.

  1. Pooled it
  2. Guideline
  3. Guideline
  4. Article
  5. Article
  6. Pediatric investigation · 2026
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  7. Review
  8. Article
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  11. Article
  12. Classification of domains in predicted structures of the human proteome.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  14. Article
  15. Review
  16. Review
  17. Case Report:Frontiers in pediatrics · 2021
    Article
  18. An Early Diagnostic Clue forFrontiers in cell and developmental biology · 2021
    Article
  19. Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 18 institutions in 1 country.

Sandrine Vuillaumier-BarrotAssistance Publique-Hôpitaux de Paris, Hôpital Bichat-Claude Bernard, Biochimie, Paris 75877, France. sandrine.vuillaumier@bch.aphp.fr
Céline Bouchet-Séraphin
Malika Chelbi
Louise Devisme
Samuel Quentin
Steven Gazal
Annie Laquerrière
Catherine Fallet-Bianco
Philippe Loget
Sylvie Odent
Dominique Carles
Anne Bazin
Jacqueline Aziza
Alix Clemenson
Fabien Guimiot
Maryse Bonnière
Sophie Monnot
Christine Bole-Feysot
Jean-Pierre Bernard
Laurence Loeuillet
Marie Gonzales
Koryna Socha
Bernard Grandchamp
Tania Attié-Bitach
Férechté Encha-Razavi
Nathalie Seta
Hôpital Necker-Enfants Malades · FRHôpital Bichat-Claude-Bernard · FRAssistance Publique – Hôpitaux de Paris · FRUniversité Claude Bernard Lyon 1 · FRUniversité Paris Cité · FRCentre Hospitalier de Troyes · FRCentre Hospitalier Intercommunal de Poissy · FRCentre Hospitalier René-Dubos · FRCentre Hospitalier Sainte-Anne · FRCentre Hospitalier Universitaire de Lille · FRCentre Hospitalier Universitaire de Rennes · FRDélégation Paris 5 · FRHôpital Nord · FRHôpital Pellegrin · FRHôpital Purpan · FRHôpital Saint-Louis · FRUniversité de Rennes · FRUniversité de Rouen Normandie · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cobblestone lissencephaly is a peculiar brain malformation with characteristic radiological anomalies. It is defined as cortical dysplasia that results when neuroglial overmigration into the arachnoid space forms an extracortical layer that produces agyria and/or a "cobblestone" brain surface and ventricular enlargement. Cobblestone lissencephaly is pathognomonic of a continuum of autosomal-recessive diseases characterized by cerebral, ocular, and muscular deficits. These include Walker-Warburg syndrome, muscle-eye-brain disease, and Fukuyama muscular dystrophy. Mutations in POMT1, POMT2, POMGNT1, LARGE, FKTN, and FKRP identified these diseases as alpha-dystroglycanopathies. Our exhaustive screening of these six genes, in a cohort of 90 fetal cases, led to the identification of a mutation in only 53% of the families, suggesting that other genes might also be involved. We therefore decided to perform a genome-wide study in two multiplex families. This allowed us to identify two additional genes: TMEM5 and ISPD. Because TMEM has a glycosyltransferase domain and ISPD has an isoprenoid synthase domain characteristic of nucleotide diP-sugar transferases, these two proteins are thought to be involved in the glycosylation of dystroglycan. Further screening of 40 families with cobblestone lissencephaly identified nonsense and frameshift mutations in another four unrelated cases for each gene, increasing the mutational rate to 64% in our cohort. All these cases displayed a severe phenotype of cobblestone lissencephaly A. TMEM5 mutations were frequently associated with gonadal dysgenesis and neural tube defects, and ISPD mutations were frequently associated with brain vascular anomalies.

Indexed as

MutationAllelesCobblestone LissencephalyConsanguinityExonsFamilyFetusGene OrderGenotypeHumansIntronsMembrane ProteinsNucleotidyltransferasesPentosyltransferasesCRPPA protein, humanMembrane ProteinsNucleotidyltransferasesPentosyltransferasesRXYLT1 protein, human

Identifiers

PMID23217329
PMCPMC3516603
OpenAlexW2056315450

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.