Evidence map›Paper›PMID 23216753›Full record

ArticleMicrobial cell factories2012

De novo production of the flavonoid naringenin in engineered Saccharomyces cerevisiae.

Frank Koopman, Jules Beekwilder, Barbara Crimi, Adele van Houwelingen, Robert D Hall, Dirk Bosch, Antonius J A van Maris, Jack T Pronk, Jean-Marc Daran

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed
8.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 365 citations in OpenAlex.

  1. Review
  2. Engineering ofACS omega · 2026
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  3. Production of flavonoidPlant biotechnology (Tokyo, Japan) · 2026
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  4. ACS synthetic biology · 2025
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  5. Review
  6. Review
  7. Review
  8. Metabolic engineering ofMetabolic engineering communications · 2024
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  9. Review
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  11. Review
  12. Article
  13. Machine Learning-Guided Optimization ofACS synthetic biology · 2024
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  14. Review
  15. Article
  16. Article
  17. Article
  18. Systems Metabolic Engineering ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  19. Article
  20. Microbiology spectrum · 2024
    Article

55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Frank KoopmanDepartment of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC, Delft, The Netherlands.
Jules Beekwilder
Barbara Crimi
Adele van Houwelingen
Robert D Hall
Dirk Bosch
Antonius J A van Maris
Jack T Pronk
Jean-Marc Daran
Centre for BioSystems Genomics · NLDelft University of Technology · NLCancer Genomics Centre · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFlavonoids comprise a large family of secondary plant metabolic intermediates that exhibit a wide variety of antioxidant and human health-related properties. Plant production of flavonoids is limited by the low productivity and the complexity of the recovered flavonoids. Thus to overcome these limitations, metabolic engineering of specific pathway in microbial systems have been envisaged to produce high quantity of a single molecules.

resultSaccharomyces cerevisiae was engineered to produce the key intermediate flavonoid, naringenin, solely from glucose. For this, specific naringenin biosynthesis genes from Arabidopsis thaliana were selected by comparative expression profiling and introduced in S. cerevisiae. The sole expression of these A. thaliana genes yielded low extracellular naringenin concentrations (<5.5 μM). To optimize naringenin titers, a yeast chassis strain was developed. Synthesis of aromatic amino acids was deregulated by alleviating feedback inhibition of 3-deoxy-d-arabinose-heptulosonate-7-phosphate synthase (Aro3, Aro4) and byproduct formation was reduced by eliminating phenylpyruvate decarboxylase (Aro10, Pdc5, Pdc6). Together with an increased copy number of the chalcone synthase gene and expression of a heterologous tyrosine ammonia lyase, these modifications resulted in a 40-fold increase of extracellular naringenin titers (to approximately 200 μM) in glucose-grown shake-flask cultures. In aerated, pH controlled batch reactors, extracellular naringenin concentrations of over 400 μM were reached.

conclusionThe results reported in this study demonstrate that S. cerevisiae is capable of de novo production of naringenin by coexpressing the naringenin production genes from A. thaliana and optimization of the flux towards the naringenin pathway. The engineered yeast naringenin production host provides a metabolic chassis for production of a wide range of flavonoids and exploration of their biological functions.

Indexed as

3-Deoxy-7-Phosphoheptulonate SynthaseAcyltransferasesAmmonia-LyasesArabidopsisCarboxy-LyasesFlavanonesFlavonoidsMetabolic EngineeringPlant ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteins3-Deoxy-7-Phosphoheptulonate SynthaseAcyltransferasesAmmonia-LyasesCarboxy-LyasesFlavanonesflavanone synthetaseFlavonoidsL-tyrosine ammonia-lyasenaringeninphenylpyruvate decarboxylasePlant ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID23216753
PMCPMC3539886
OpenAlexW2169768603

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.