Evidence map›Paper›PMID 23215347›Full record

ArticleLangmuir : the ACS journal of surfaces and colloids2013

Improved analysis for determining diffusion coefficients from short, single-molecule trajectories with photoblinking.

Bo Shuang, Chad P Byers, Lydia Kisley, Lin-Yung Wang, Julia Zhao, Hiroyuki Morimura, Stephan Link, Christy F Landes

Abstract read
In one paragraph

Article in Langmuir : the ACS journal of surfaces and colloids, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A mechanistic examination of salting out in protein-polymer membrane interactions.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Bo ShuangDepartment of Chemistry and Rice Quantum Institute, Rice University, Houston, Texas 77251-1892, United States.
Chad P Byers
Lydia Kisley
Lin-Yung Wang
Julia Zhao
Hiroyuki Morimura
Stephan Link
Christy F Landes

Funding

Structure and Function of NMDA ReceptorsR01GM094246 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI JAYARAMAN, VASANTHI · 2011 to 2016
$2.0M
Single molecule studies of HIV-1 reverse transcriptionF32GM073534 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI LANDES, CHRISTY F · 2005 to 2006
$68k
NIGMS NIH HHS F32 GM073534NIGMS NIH HHS GM94246-01A1NIGMS NIH HHS R01 GM094246
6 · The paper itself

Abstract

Two maximum likelihood estimation (MLE) methods were developed for optimizing the analysis of single-molecule trajectories that include phenomena such as experimental noise, photoblinking, photobleaching, and translation or rotation out of the collection plane. In particular, short, single-molecule trajectories with photoblinking were studied, and our method was compared to existing analytical techniques applied to simulated data. The optimal method for various experimental cases was established, and the optimized MLE method was applied to a real experimental system: single-molecule diffusion of fluorescent molecular machines known as nanocars.

Indexed as

PhotobleachingDiffusionFluorescenceNanostructures

Identifiers

PMID23215347
PMCPMC3648847

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.