Evidence map›Paper›PMID 23214943›Full record

ArticleJournal of the American Chemical Society2012

Probing the mechanism of 1,4-conjugate elimination reactions catalyzed by terpene synthases.

Juan A Faraldos, Veronica Gonzalez, Amang Li, Fanglei Yu, Mustafa Köksal, David W Christianson, Rudolf K Allemann

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Synlett : accounts and rapid communications in synthetic organic chemistry
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Juan A FaraldosSchool of Chemistry and Cardiff Catalysis Institute, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, United Kingdom.
Veronica Gonzalez
Amang Li
Fanglei Yu
Mustafa Köksal
David W Christianson
Rudolf K Allemann

Funding

STRUCTURE/FUNCTION OF BIOSYNTHETIC ENZYMESR01GM056838 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIANSON, DAVID W · 1998 to 2025
$8.0M
Biotechnology and Biological Sciences Research Council BB/G003572/1NIGMS NIH HHS GM56838NIGMS NIH HHS R01 GM056838
6 · The paper itself

Abstract

The reaction mechanisms of (E)-β-farnesene synthase (EBFS) and isoprene synthase (ISPS), enzymes that catalyze a formal regiospecific 1,4-conjugate elimination of hydrogen diphosphate from (E,E)-farnesyl and dimethylallyl diphosphate (FDP and DMADP) to generate the semiochemicals (E)-β-farnesene and isoprene, respectively, were probed with substrate analogs and kinetic measurements. The results support stepwise reaction mechanisms through analogous enzyme-bound allylic cationic intermediates. For EBFS, we demonstrate that the elimination reaction can proceed via the enzyme-bound intermediate trans-nerolidyl diphosphate, while for ISPS the intermediacy of 2-methylbut-3-enyl 2-diphosphate can be inferred from the product outcome when deuterated DMADPs are used as substrates. Possible implications derived from the mechanistic details of the EBFS-catalyzed reaction for the evolution of sesquiterpene synthases are discussed.

Indexed as

Alkyl and Aryl TransferasesButadienesHemiterpenesMenthaOrganophosphorus CompoundsPentanesPlant ProteinsPolyisoprenyl PhosphatesPopulusPyrophosphatasesRecombinant ProteinsSesquiterpenes3,3-dimethylallyl pyrophosphateAlkyl and Aryl Transferasesbeta-farnesenebeta-farnesene synthaseButadienesfarnesyl pyrophosphateHemiterpenesisopreneisoprene synthaseOrganophosphorus CompoundsPentanesPlant ProteinsPolyisoprenyl PhosphatesPyrophosphatasesRecombinant ProteinsSesquiterpenesterpene synthase

Identifiers

PMID23214943
PMCPMC3530649

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.