Evidence map›Paper›PMID 23212908›Full record

ArticleThe Journal of biological chemistry2013

ATP binding by proteasomal ATPases regulates cellular assembly and substrate-induced functions of the 26 S proteasome.

Young-Chan Kim, Xiaohua Li, David Thompson, George N DeMartino

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Substrate-engaged 26Science (New York, N.Y.) · 2018
    Article
  9. ZFAND5/ZNF216 is an activator of the 26S proteasome that stimulates overall protein degradation.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Tuning the proteasome to brighten the end of the journey.American journal of physiology. Cell physiology · 2016
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  20. Regulated protein turnover: snapshots of the proteasome in action.Nature reviews. Molecular cell biology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Young-Chan KimDepartment of Physiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9040, USA.
Xiaohua Li
David Thompson
George N DeMartino
The University of Texas Southwestern Medical Center · US

Funding

PHS HHS NIDDK R01 46181
6 · The paper itself

Abstract

We examined the role of ATP binding by six different ATPase subunits (Rpt1-6) in the cellular assembly and molecular functions of mammalian 26 S proteasome. Four Rpt subunits (Rpt1-4) with ATP binding mutations were incompetent for cellular assembly into 26 S proteasome. In contrast, analogous mutants of Rpt5 and Rpt6 were incorporated normally into 26 S proteasomes in both intact cells and an in vitro assembly assay. Surprisingly, purified 26 S proteasomes containing either mutant Rpt5 or Rpt6 had normal basal ATPase activity and substrate gate opening for hydrolysis of short peptides. However, these mutant 26 S proteasomes were severely defective for ATP-dependent in vitro degradation of ubiquitylated and non-ubiquitylated proteins and did not display substrate-stimulated ATPase and peptidase activities characteristic of normal proteasomes. These results reveal differential roles of ATP binding by various Rpt subunits in proteasome assembly and function. They also indicate that substrate-stimulated ATPase activity and gating depend on the concerted action of a full complement of Rpt subunits competent for ATP binding and that this regulation is essential for normal proteolysis. Thus, protein substrates appear to promote their own degradation by stimulating proteasome functions involved in proteolysis.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateChromatography, AffinityHEK293 CellsHumansMultiprotein ComplexesMutant ProteinsPeptidesProteasome Endopeptidase ComplexProtein BindingProtein SubunitsProteolysisSubstrate SpecificityUbiquitinationAdenosine TriphosphatasesAdenosine TriphosphateATP dependent 26S proteaseMultiprotein ComplexesMutant ProteinsPA700 proteasome activatorPeptidesProteasome Endopeptidase ComplexProtein Subunits

Identifiers

PMID23212908
PMCPMC3561553
OpenAlexW2156245197

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.