Evidence map›Paper›PMID 23212381›Full record

ArticleNature communications2012

Molecular mechanism of the assembly of an acid-sensing receptor ion channel complex.

Yong Yu, Maximilian H Ulbrich, Ming-Hui Li, Scott Dobbins, Wei K Zhang, Liang Tong, Ehud Y Isacoff, Jian Yang

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 53 citations in OpenAlex.

  1. A Historical Outline of Fluorescence Spectroscopy in Ion Channel Research.Advances in experimental medicine and biology · 2026
    Review
  2. Article
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  5. Article
  6. Review
  7. Article
  8. Article
  9. The GPCR properties of polycystin-1- A new paradigm.Frontiers in molecular biosciences · 2022
    Review
  10. Nanchung and Inactive define pore properties of the native auditory transduction channel inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Structural basis for CaNature communications · 2021
    Article
  12. Distribution and Assembly of TRP Ion Channels.Advances in experimental medicine and biology · 2021
    Article
  13. Article
  14. Article
  15. Review
  16. Global versus local mechanisms of temperature sensing in ion channels.Pflugers Archiv : European journal of physiology · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Yong YuDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Maximilian H Ulbrich
Ming-Hui Li
Scott Dobbins
Wei K Zhang
Liang Tong
Ehud Y Isacoff
Jian Yang
Columbia University · USLawrence Berkeley National Laboratory · USUniversity of California, Berkeley · US

Funding

TRPML1 channel physiology and pathophysiologyR01GM085234 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI YANG, JIAN · 2009 to 2022
$4.2M
STRUCTURAL REARRANGEMENTS IN CHANNEL GATINGR01NS035549 · NINDS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ISACOFF, EHUD · 1996 to 2013
$4.1M
Structural basis of TRPC channel function and regulationR01NS045383 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI YANG, JIAN · 2002 to 2011
$3.2M
NIGMS NIH HHS GM085234NIGMS NIH HHS R01 GM085234NINDS NIH HHS NS035549NINDS NIH HHS NS045383NINDS NIH HHS R01 NS035549NINDS NIH HHS R01 NS045383
6 · The paper itself

Abstract

Polycystic kidney disease (PKD) family proteins associate with transient receptor potential (TRP) channel family proteins to form functionally important complexes. PKD proteins differ from known ion channel-forming proteins and are generally thought to act as membrane receptors. Here we find that PKD1L3, a PKD protein, functions as a channel-forming subunit in an acid-sensing heteromeric complex formed by PKD1L3 and TRPP3, a TRP channel protein. Single amino-acid mutations in the putative pore region of both proteins alter the channel's ion selectivity. The PKD1L3/TRPP3 complex in the plasma membrane of live cells contains one PKD1L3 and three TRPP3. A TRPP3 C-terminal coiled-coil domain forms a trimer in solution and in crystal, and has a crucial role in the assembly and surface expression of the PKD1L3/TRPP3 complex. These results demonstrate that PKD subunits constitute a new class of channel-forming proteins, enriching our understanding of the function of PKD proteins and PKD/TRPP complexes.

Indexed as

Amino Acid SubstitutionAnimalsCalcium ChannelsCell Membrane PermeabilityDimethylaminesHumansIon ChannelsMacromolecular SubstancesMagnesiumMethylaminesMiceProtein Structure, TertiaryReceptors, Cell SurfaceSequence AlignmentXenopusCalcium ChannelsdimethylamineDimethylaminesIon ChannelsMacromolecular SubstancesMagnesiumMethylaminesPKD1L3 protein, humanPKD2L1 protein, humanReceptors, Cell Surfacetrimethylamine

Identifiers

PMID23212381
PMCPMC3575195
OpenAlexW1967822841

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.