Evidence map›Paper›PMID 23211429›Full record

ArticlePharmacogenetics and genomics2013

Effects upon in-vivo nicotine metabolism reveal functional variation in FMO3 associated with cigarette consumption.

A Joseph Bloom, Sharon E Murphy, Maribel Martinez, Linda B von Weymarn, Laura J Bierut, Alison Goate

Abstract read
In one paragraph

Article in Pharmacogenetics and genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Impact of Genetic Variants in the Nicotine Metabolism Pathway on Nicotine Metabolite Levels in Smokers.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Article
  5. Review
  6. Review
  7. Article
  8. Nicotine-Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2019
    Article
  9. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

A Joseph BloomDepartment of Psychiatry, Washington University School of Medicine, St Louis, Missouri 63119, USA. bloomj@psychiatry.wustl.edu
Sharon E Murphy
Maribel Martinez
Linda B von Weymarn
Laura J Bierut
Alison Goate
University of Minnesota · USWashington University in St. Louis · US

Funding

Women's CancerP30CA077598 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Douglas Yee · 1998 to 2026
$100.4M
The Collaborative Genetic Study of Nicotine DependenceP01CA089392 · NCI · WASHINGTON UNIVERSITY · PI RICE, JOHN P · 2001 to 2012
$17.3M
Training in the Genetics and Molecular Biology of Mental DisordersT32MH014677 · NIMH · WASHINGTON UNIVERSITY · PI RICE, JOHN P. · 1985 to 2020
$3.6M
Cytochrome P450 in Nicotine MetabolismR01CA084529 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MURPHY, SHARON E · 2001 to 2011
$1.6M
Statistical Methods for the Genetics of AlcoholismK01AA015572 · NIAAA · WASHINGTON UNIVERSITY · PI HINRICHS, ANTHONY L · 2006 to 2010
$635k
Human Genetics of Addiction: A Study of Common and Specific FactorsK02DA021237 · NIDA · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2007 to 2011
$567k
NCI NIH HHS CA089392NCI NIH HHS P01 CA089392NCI NIH HHS P30 CA077598NCI NIH HHS R01 CA084529NIAAA NIH HHS AA015572NIAAA NIH HHS K01 AA015572NIDA NIH HHS DA021237NIDA NIH HHS K02 DA021237NIMH NIH HHS 5T32MH014677-33NIMH NIH HHS T32 MH014677
6 · The paper itself

Abstract

backgroundFlavin-containing monooxygenases (FMO) catalyze the metabolism of nucleophilic heteroatom-containing drugs and xenobiotics, including nicotine. Rare mutations in FMO3 are responsible for defective N-oxidation of dietary trimethylamine leading to trimethylaminuria, and common genetic variation in FMO3 has been linked to interindividual variability in metabolic function that may be substrate specific.

methodsA genetic model of CYP2A6 function is used as a covariate to reveal functional polymorphism in FMO3 that indirectly influences the ratio of deuterated nicotine metabolized to cotinine following oral administration. The association is tested between FMO3 haplotype and cigarette consumption in a set of nicotine-dependent smokers.

resultsFMO3 haplotype, based on all common coding variants in Europeans, significantly predicts nicotine metabolism and accounts for ∼2% of variance in the apparent percent of nicotine metabolized to cotinine. The metabolic ratio is not associated with FMO2 haplotype or an FMO1 expression quantitative trait locus. Cross-validation demonstrates calculated FMO3 haplotype parameters to be robust and significantly improve the predictive nicotine metabolism model over CYP2A6 genotype alone. Functional classes of FMO3 haplotypes, as determined by their influence on nicotine metabolism to cotinine, are also significantly associated with cigarettes per day in nicotine-dependent European Americans (n=1025, P=0.04), and significantly interact (P=0.016) with CYP2A6 genotype to predict cigarettes per day.

conclusionThese findings suggest that common polymorphisms in FMO3 influence nicotine clearance and that these genetic variants in turn influence cigarette consumption.

Indexed as

Tobacco ProductsAdultChromatography, LiquidCotinineFemaleGenotypeHaplotypesHumansMaleMetabolic Clearance RateNicotineOxygenasesPolymorphism, GeneticTandem Mass SpectrometryWhite PeopleCotininedimethylaniline monooxygenase (N-oxide forming)NicotineOxygenases

Identifiers

PMID23211429
PMCPMC4583063
OpenAlexW2319311314

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.