Evidence map›Paper›PMID 23210507›Full record

ArticleAnalytical chemistry2012

Single-molecule fluorescence quantification with a photobleached internal standard.

Jennifer C Gadd, Bryant S Fujimoto, Sandra M Bajjalieh, Daniel T Chiu

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Quantitative microscopy based on single-molecule fluorescence.Current opinion in chemical biology · 2017
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jennifer C GaddDepartment of Chemistry, University of Washington, Seattle, Washington 98195-1700, USA.
Bryant S Fujimoto
Sandra M Bajjalieh
Daniel T Chiu
University of Washington · US

Funding

High-Resolution Analysis of Synaptic ProteinsR01NS052637 · NINDS · UNIVERSITY OF WASHINGTON · PI CHIU, DANIEL T · 2005 to 2013
$3.2M
NINDS NIH HHS R01 NS052637
6 · The paper itself

Abstract

In cellular and molecular biology, fluorophores are employed to aid in tracking and quantifying molecules involved in cellular function. We previously developed a sensitive single-molecule quantification technique to count the number of proteins and the variation of the protein number over the population of individual subcellular organelles. However, environmental effects on the fluorescent intensity of fluorophores can make it difficult to accurately quantify proteins using these sensitive techniques. In this letter, we demonstrate the use of photobleaching to extract an accurate single-molecule calibration intensity distribution from the sample directly to avoid any differences in environment that may alter the count. Using this technique, we were able to show that goat antimouse IgG antibody labeled with Alexa Fluor 488, an environmentally insensitive fluorophore, exhibited an average fluorescence equivalent to 4.6 single fluorophores. SynaptopHluorin vesicles, which contain the environmentally sensitive green fluorescent protein, exhibited an average of 4.4 single green fluorescent proteins per vesicle.

Indexed as

PhotobleachingAnimalsFluorescent DyesGreen Fluorescent ProteinsHydrazinesMiceMice, TransgenicSynaptic VesiclesAlexa 488 hydrazideFluorescent DyesGreen Fluorescent ProteinsHydrazines

Identifiers

PMID23210507
PMCPMC3526837
OpenAlexW2027765967

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.