Evidence map›Paper›PMID 23210463›Full record

ArticleThe journal of physical chemistry. A2013

Simulations of the two-dimensional electronic spectroscopy of the photosystem II reaction center.

K L M Lewis, F D Fuller, J A Myers, C F Yocum, S Mukamel, D Abramavicius, J P Ogilvie

Abstract read
In one paragraph

Article in The journal of physical chemistry. A, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Protein Matrix Control of Reaction Center Excitation in Photosystem II.Journal of the American Chemical Society · 2020
    Article
  10. Article
  11. Review
  12. Optimal Energy Transfer in Light-Harvesting Systems.Molecules (Basel, Switzerland) · 2015
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

K L M LewisDepartment of Physics and Biophysics, University of Michigan, Ann Arbor, Michigan 48109-1040, USA.
F D Fuller
J A Myers
C F Yocum
S Mukamel
D Abramavicius
J P Ogilvie

Funding

Multidimensional Femtosecond Correlation Spectroscopic Probes of BiomoleculesR01GM059230 · NIGMS · UNIVERSITY OF ROCHESTER · PI MUKAMEL, SHAUL · 2001 to 2013
$3.2M
NIGMS NIH HHS R01 GM059230
6 · The paper itself

Abstract

We report simulations of the two-dimensional electronic spectroscopy of the Q(y) band of the D1-D2-Cyt b559 photosystem II reaction center at 77 K. We base the simulations on an existing Hamiltonian that was derived by simultaneous fitting to a wide range of linear spectroscopic measurements and described within modified Redfield theory. The model obtains reasonable agreement with most aspects of the two-dimensional spectra, including the overall peak shapes and excited state absorption features. It does not reproduce the rapid equilibration from high energy to low energy excitonic states evident by a strong cross-peak below the diagonal. We explore modifications to the model to incorporate new structural data and improve agreement with the two-dimensional spectra. We find that strengthening the system-bath coupling and lowering the degree of disorder significantly improves agreement with the cross-peak feature, while lessening agreement with the relative diagonal/antidiagonal width of the 2D spectra. We conclude that two-dimensional electronic spectroscopy provides a sensitive test of excitonic models of the photosystem II reaction center and discuss avenues for further refinement of such models.

Indexed as

Computer SimulationModels, MolecularEnergy TransferPhotosystem II Protein ComplexProtein ConformationSpectrum AnalysisPhotosystem II Protein Complex

Identifiers

PMID23210463
PMCPMC3702820

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.