Evidence map›Paper›PMID 23209439›Full record

ArticlePLoS genetics2012

Discovering thiamine transporters as targets of chloroquine using a novel functional genomics strategy.

Zhiwei Huang, Sankaranarayanan Srinivasan, Jianhuai Zhang, Kaifu Chen, Yongxiang Li, Wei Li, Florante A Quiocho, Xuewen Pan

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Existing Drugs Considered as Promising in COVID-19 Therapy.International journal of molecular sciences · 2021
    Review
  5. Review
  6. Review
  7. Fibrillar α-synuclein toxicity depends on functional lysosomes.The Journal of biological chemistry · 2020
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Autophagy in cancer.F1000prime reports · 2015
    Review
  14. Article
  15. Article
  16. Reply to "chloroquine, an antifungal but also a fertility drug".Antimicrobial agents and chemotherapy · 2013
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

Zhiwei HuangVerna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas, United States of America.
Sankaranarayanan Srinivasan
Jianhuai Zhang
Kaifu Chen
Yongxiang Li
Wei Li
Florante A Quiocho
Xuewen Pan
Baylor College of Medicine · US

Funding

Functional Variomics and ApplicationsR01HG004840 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI PAN, XUEWEN · 2009 to 2011
$1.6M
NHGRI NIH HHS HG004840NHGRI NIH HHS R01 HG004840
6 · The paper itself

Abstract

Chloroquine (CQ) and other quinoline-containing antimalarials are important drugs with many therapeutic benefits as well as adverse effects. However, the molecular targets underlying most such effects are largely unknown. By taking a novel functional genomics strategy, which employs a unique combination of genome-wide drug-gene synthetic lethality (DGSL), gene-gene synthetic lethality (GGSL), and dosage suppression (DS) screens in the model organism Saccharomyces cerevisiae and is thus termed SL/DS for simplicity, we found that CQ inhibits the thiamine transporters Thi7, Nrt1, and Thi72 in yeast. We first discovered a thi3Δ mutant as hypersensitive to CQ using a genome-wide DGSL analysis. Using genome-wide GGSL and DS screens, we then found that a thi7Δ mutation confers severe growth defect in the thi3Δ mutant and that THI7 overexpression suppresses CQ-hypersensitivity of this mutant. We subsequently showed that CQ inhibits the functions of Thi7 and its homologues Nrt1 and Thi72. In particular, the transporter activity of wild-type Thi7 but not a CQ-resistant mutant (Thi7(T287N)) was completely inhibited by the drug. Similar effects were also observed with other quinoline-containing antimalarials. In addition, CQ completely inhibited a human thiamine transporter (SLC19A3) expressed in yeast and significantly inhibited thiamine uptake in cultured human cell lines. Therefore, inhibition of thiamine uptake is a conserved mechanism of action of CQ. This study also demonstrated SL/DS as a uniquely effective methodology for discovering drug targets.

Indexed as

Nucleoside Transport ProteinsSaccharomyces cerevisiae ProteinsAntimalarialsBiological TransportChloroquineGene ExpressionGenomicsHumansMembrane Transport ProteinsMutationSaccharomyces cerevisiaeThiamineAntimalarialsChloroquineMembrane Transport ProteinsNrt1 protein, S cerevisiaeNucleoside Transport ProteinsSaccharomyces cerevisiae ProteinsSLC19A3 protein, humanThi72 protein, S cerevisiaeThiamine

Identifiers

PMID23209439
PMCPMC3510038
OpenAlexW2027671806

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.