Evidence map›Paper›PMID 23209288›Full record

ArticleThe Journal of biological chemistry2013

An evolutionarily conserved innate immunity protein interaction network.

Lesly De Arras, Amara Seng, Brad Lackford, Mohammad R Keikhaee, Bruce Bowerman, Jonathan H Freedman, David A Schwartz, Scott Alper

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
0.9field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. [Inhibitory effect of small-molecule compound AM679 targeting elongation-factor binding protein 2 on hepatitis B virus in vitro].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2024
    Article
  3. Article
  4. The Translational Value of Rodent Models of Sepsis.American journal of respiratory and critical care medicine · 2024
    Article
  5. The Emerging Role of 3-Hydroxyanthranilic Acid onbioRxiv : the preprint server for biology · 2024
    Article
  6. Review
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  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Functional Genomics in Murine Macrophages.Methods in molecular biology (Clifton, N.J.) · 2018
    Article
  18. What Can We Learn About Human Disease from the Nematode C. elegans?Methods in molecular biology (Clifton, N.J.) · 2018
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Lesly De ArrasIntegrated Department of Immunology, National Jewish Health and University of Colorado, Denver, Colorado 80206, USA.
Amara Seng
Brad Lackford
Mohammad R Keikhaee
Bruce Bowerman
Jonathan H Freedman
David A Schwartz
Scott Alper
National Jewish Health · USNational Institutes of Health · USOregon Research Institute · US

Funding

Comparative Genomic Responses to Environmental StressorsZIAES102045 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI FREEDMAN, JONATHAN H · 2009 to 2014
$6.9M
Mitotic Spindle Assembly & Function in C. elegans - Equipment SupplementR01GM049869 · NIGMS · UNIVERSITY OF OREGON · PI BOWERMAN, BRUCE A · 1994 to 2019
$6.5M
Comparative Genomic Responses to Environmental StressorsZ01ES102045 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI FREEDMAN, JONATHAN H · 2006 to 2008
$3.1M
The Genetic Determinants of Innate Immunity and Host DefenseZ01ES101946 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI SCHWARTZ, DAVID · 2005 to 2008
$1.9M
Molecular mechanisms utilized by novel innate immunity regulatorsR21ES019256 · NIEHS · NATIONAL JEWISH HEALTH · PI ALPER, SCOTT · 2010 to 2011
$434k
Intramural NIH HHS Z01 ES101946Intramural NIH HHS Z01 ES102045NIEHS NIH HHS R21 ES019256NIEHS NIH HHS R21ES019256NIGMS NIH HHS GM049869NIGMS NIH HHS R01 GM049869
6 · The paper itself

Abstract

The innate immune response plays a critical role in fighting infection; however, innate immunity also can affect the pathogenesis of a variety of diseases, including sepsis, asthma, cancer, and atherosclerosis. To identify novel regulators of innate immunity, we performed comparative genomics RNA interference screens in the nematode Caenorhabditis elegans and mouse macrophages. These screens have uncovered many candidate regulators of the response to lipopolysaccharide (LPS), several of which interact physically in multiple species to form an innate immunity protein interaction network. This protein interaction network contains several proteins in the canonical LPS-responsive TLR4 pathway as well as many novel interacting proteins. Using RNAi and overexpression studies, we show that almost every gene in this network can modulate the innate immune response in mouse cell lines. We validate the importance of this network in innate immunity regulation in vivo using available mutants in C. elegans and mice.

Indexed as

Immunity, InnateRNA InterferenceAnimalsBiological EvolutionCaenorhabditis elegansCaenorhabditis elegans ProteinsCell LineGene ExpressionHumansLipopolysaccharidesMacrophagesMiceMutationOligonucleotide Array Sequence AnalysisProtein Interaction MapsRNA, Small InterferingCaenorhabditis elegans ProteinsLipopolysaccharidesRNA, Small InterferingToll-Like Receptor 4

Identifiers

PMID23209288
PMCPMC3548504
OpenAlexW1989894293

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.