Evidence map›Paper›PMID 23207903›Full record

ArticleMolecular and cellular biology2013

14-3-3 (Bmh) proteins regulate combinatorial transcription following RNA polymerase II recruitment by binding at Adr1-dependent promoters in Saccharomyces cerevisiae.

Katherine A Braun, Pabitra K Parua, Kenneth M Dombek, Gregory E Miner, Elton T Young

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Domesticated LTR-RetrotransposonLife (Basel, Switzerland) · 2022
    Review
  3. D-Xylose Sensing inInternational journal of molecular sciences · 2021
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Katherine A BraunDepartment of Biochemistry, University of Washington, Seattle, Washington, USA.
Pabitra K Parua
Kenneth M Dombek
Gregory E Miner
Elton T Young
University of Washington · US

Funding

GENETIC REGULATION OF ALCOHOL METABOLISM IN YEASTR01GM026079 · NIGMS · UNIVERSITY OF WASHINGTON · PI YOUNG, ELTON T. · 1985 to 2013
$6.1M
NIGMS NIH HHS GM26079NIGMS NIH HHS R01 GM026079
6 · The paper itself

Abstract

Adr1 and Cat8 are nutrient-regulated transcription factors in Saccharomyces cerevisiae that coactivate genes necessary for growth in the absence of a fermentable carbon source. Transcriptional activation by Adr1 is dependent on the AMP-activated protein kinase Snf1 and is inhibited by binding of Bmh, yeast 14-3-3 proteins, to the phosphorylated Adr1 regulatory domain. We show here that Bmh inhibits transcription by binding to Adr1 at promoters that contain a preinitiation complex, demonstrating that Bmh-mediated inhibition is not due to nuclear exclusion, inhibition of DNA binding, or RNA polymerase II (Pol II) recruitment. Adr1-dependent mRNA levels under repressing growth conditions are synergistically enhanced in a mutant lacking Bmh and the two major histone deacetylases (HDACs), suggesting that Bmh and HDACs inhibit gene expression independently. The synergism requires Snf1 and Adr1 but not Cat8. Inactivating Bmh or preventing it from binding to Adr1 suppresses the normal requirement for Cat8 at codependent promoters, suggesting that Bmh modulates combinatorial control of gene expression in addition to having an inhibitory role in transcription. Activating Snf1 by deleting Reg1, a Glc7 protein phosphatase regulatory subunit, is lethal in combination with defective Bmh in strain W303, suggesting that Bmh and Snf1 have opposing roles in an essential cellular process.

Indexed as

Gene Expression Regulation, Fungal14-3-3 ProteinsDNA-Binding ProteinsHistone DeacetylasesMutationPromoter Regions, GeneticProtein BindingProtein Serine-Threonine KinasesRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscriptional ActivationTranscription Factors14-3-3 ProteinsADR1 protein, S cerevisiaeBMH1 protein, S cerevisiaeBMH2 protein, S cerevisiaeCAT8 protein, S cerevisiaeDNA-Binding ProteinsGAL4 protein, S cerevisiaeHistone DeacetylasesProtein Serine-Threonine KinasesRNA Polymerase IISaccharomyces cerevisiae ProteinsSNF1-related protein kinasesTrans-ActivatorsTranscription Factors

Identifiers

PMID23207903
PMCPMC3571347
OpenAlexW2164725344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.