Evidence map›Paper›PMID 23207063›Full record

ArticleInternational journal for parasitology2013

Three genes involved in the oxidative burst are closely linked in the genome of the snail, Biomphalaria glabrata.

Michael S Blouin, Kaitlin M Bonner, Becky Cooper, Vindhya Amarasinghe, Ryan P O'Donnell, Christopher J Bayne

Open access · greenAbstract read
In one paragraph

Article in International journal for parasitology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

  1. Accelerating snail vector genomics.Infectious diseases of poverty · 2024
    Article
  2. Article
  3. The genome and transcriptome of the snailbioRxiv : the preprint server for biology · 2023
    Article
  4. Article
  5. Biomphalaria glabrata immunity: Post-genome advances.Developmental and comparative immunology · 2020
    Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Comparative immunogenomics of molluscs.Developmental and comparative immunology · 2017
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Michael S BlouinDept. Zoology, Oregon State University, Corvallis, OR 97331, USA. blouinm@science.oregonstate.edu
Kaitlin M Bonner
Becky Cooper
Vindhya Amarasinghe
Ryan P O'Donnell
Christopher J Bayne
Oregon State University · US

Funding

UNDERLYING MECHANISMS OF SCHISTOSOME/SNAIL COMPATIBILITYR01AI016137 · NIAID · OREGON STATE UNIVERSITY · PI BAYNE, CHRISTOPHER JEFFREY · 1989 to 2012
$3.1M
Underlying mechanisms of schistosome/snail compatibilityR21AI016137 · NIAID · OREGON STATE UNIVERSITY · PI BAYNE, CHRISTOPHER JEFFREY · 2001 to 2001
$273k
NIAID NIH HHS R01 AI016137NIAID NIH HHS R21 AI016137
6 · The paper itself

Abstract

Allelic variation at the Cu-Zn superoxide dismutase (SOD1) locus has been shown to be associated with resistance of the snail, Biomphalaria glabrata, to infection by the trematode parasite, Schistosoma mansoni. SOD1 catalyses the production of hydrogen peroxide, a known cytotoxic component of the oxidative burst used in defence against pathogens. In our laboratory population of B. glabrata, the most resistant allele at SOD1 is over-expressed relative to the other two alleles. Because hydrogen peroxide also causes oxidative stress on host tissues, we hypothesised that over-expression of SOD1 might be compensated by epistatic interactions with other loci involved in oxidation-reduction (redox) pathways. Catalase, peroxiredoxins and glutathione peroxidases all degrade hydrogen peroxide. We tested whether alleles at each of these loci were in linkage disequilibrium with SOD1 in our population, as might be expected given strong epistatic selection. We found that SOD1, catalase (CAT) and a peroxiredoxin locus (PRX4) are in strong linkage disequilibrium in our population. We also found that these loci are tightly linked, within 1-2cM of each other, which explains the high linkage disequilibrium. This result raises the possibility that there is a linked cluster of redox genes, and perhaps other defence-relevant genes, in the B. glabrata genome. Whether epistatic interactions for fitness actually exist among these loci still needs to be tested. However the close physical linkage among SOD1, PRX4 and CAT, and subsequent high disequilibrium, makes such interactions a plausible hypothesis.

Indexed as

Respiratory BurstAnimalsBiomphalariaCatalaseLinkage DisequilibriumMetabolic Networks and PathwaysMolecular Sequence DataMultigene FamilyPeroxiredoxinsSequence Analysis, DNASuperoxide DismutaseSuperoxide Dismutase-1CatalasePeroxiredoxinsSuperoxide DismutaseSuperoxide Dismutase-1

Identifiers

PMID23207063
PMCPMC3733350
OpenAlexW2040824370

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.