Evidence map›Paper›PMID 23205933›Full record

ArticleAnalytical chemistry2012

Cellular barcodes for efficiently profiling single-cell secretory responses by microengraving.

Yvonne J Yamanaka, Gregory L Szeto, Todd M Gierahn, Talitha L Forcier, Kelly F Benedict, Mavis S N Brefo, Douglas A Lauffenburger, Darrell J Irvine, J Christopher Love

Abstract read
In one paragraph

Article in Analytical chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. The Intriguing Landscape of Single-Cell Protein Analysis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Review
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  7. Dynamic secretome of bone marrow-derived stromal cells reveals a cardioprotective biochemical cocktail.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
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  9. Review
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  12. Review
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  15. Article
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  17. Article
  18. Article
  19. Article
  20. Advances in high-throughput single-cell microtechnologies.Current opinion in biotechnology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yvonne J YamanakaDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Gregory L Szeto
Todd M Gierahn
Talitha L Forcier
Kelly F Benedict
Mavis S N Brefo
Douglas A Lauffenburger
Darrell J Irvine
J Christopher Love

Funding

HVTN Laboratory ProgramU01AI068618 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MCELRATH, MARGARET JULIANA · 2006 to 2010
$82.6M
Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI David A. Hafler, RUTH R MONTGOMERY · 2010 to 2026
$50.4M
Nanowell-based single-cell technology for characterizing clinical samples ex vivoR56AI104274 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LOVE, JOHN CHRISTOPHER · 2012 to 2012
$406k
Howard Hughes Medical InstituteNIAID NIH HHS 1R56AI104274NIAID NIH HHS 1U19AI089992NIAID NIH HHS 5U01AI068618NIAID NIH HHS R56 AI104274NIAID NIH HHS U01 AI068618NIAID NIH HHS U19 AI089992
6 · The paper itself

Abstract

We present a method that uses fluorescent cellular barcodes to increase the number of unique samples that can be analyzed simultaneously by microengraving, a nanowell array-based technique for quantifying the secretory responses of thousands of single cells in parallel. Using n different fluorescent dyes to generate 2(n) unique cellular barcodes, we achieved a 2(n)-fold reduction in the number of arrays and quantity of reagents required per sample. The utility of this approach was demonstrated in three applications of interest in clinical and experimental immunology. Using barcoded human peripheral blood mononuclear cells and T cells, we constructed dose-response curves, profiled the secretory behavior of cells treated with mechanistically distinct stimuli, and tracked the secretory behaviors of different lineages of CD4(+) T helper cells. In addition to increasing the number of samples analyzed by generating secretory profiles of single cells from multiple populations in a time- and reagent-efficient manner, we expect that cellular barcoding in combination with microengraving will facilitate unique experimental opportunities for quantitatively analyzing interactions among heterogeneous cells isolated in small groups (~2-5 cells).

Indexed as

Fluorescent DyesHumansLeukocytes, MononuclearSingle-Cell AnalysisT-LymphocytesFluorescent Dyes

Identifiers

PMID23205933
PMCPMC3691955

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.