Evidence map›Paper›PMID 23204428›Full record

ArticlePlant physiology2013

Transposon-mediated alteration of TaMATE1B expression in wheat confers constitutive citrate efflux from root apices.

Andriy Tovkach, Peter R Ryan, Alan E Richardson, David C Lewis, Tina M Rathjen, Sunita Ramesh, Stephen D Tyerman, Emmanuel Delhaize

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 141 citations in OpenAlex.

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  12. Complete mitochondrial genome ofFrontiers in plant science · 2023
    Article
  13. Genome-Wide Identification and Characterisation of WheatInternational journal of molecular sciences · 2022
    Article
  14. The Pathogen-Induced MATE GeneInternational journal of molecular sciences · 2022
    Article
  15. Review
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Andriy TovkachCommonwealth Scientific and Industrial Research Organization Plant Industry, Canberra, Australian Capital Territory 2601, Australia.
Peter R Ryan
Alan E Richardson
David C Lewis
Tina M Rathjen
Sunita Ramesh
Stephen D Tyerman
Emmanuel Delhaize
ACT GovernmentPlant Industry · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The TaMATE1B gene (for multidrug and toxic compound extrusion) from wheat (Triticum aestivum) was isolated and shown to encode a citrate transporter that is located on the plasma membrane. TaMATE1B expression in roots was induced by iron deficiency but not by phosphorus deficiency or aluminum treatment. The coding region of TaMATE1B was identical in a genotype showing citrate efflux from root apices (cv Carazinho) to one that lacked citrate efflux (cv Egret). However, sequence upstream of the coding region differed between these two genotypes in two ways. The first difference was a single-nucleotide polymorphism located approximately 2 kb upstream from the start codon in cv Egret. The second difference was an 11.1-kb transposon-like element located 25 bp upstream of the start codon in cv Carazinho that was absent from cv Egret. The influence of these polymorphisms on TaMATE1B expression was investigated using fusions to green fluorescent protein expressed in transgenic lines of rice (Oryza sativa). Fluorescence measurements in roots of rice indicated that 1.5- and 2.3-kb regions upstream of TaMATE1B in cv Carazinho (which incorporated 3' regions of the transposon-like element) generated 20-fold greater expression in the apical 1 mm of root compared with the native promoter in cv Egret. By contrast, fluorescence in more mature tissues was similar in both cultivars. The presence of the single-nucleotide polymorphism alone consistently generated 2-fold greater fluorescence than the cv Egret promoter. We conclude that the transposon-like element in cv Carazinho extends TaMATE1B expression to the root apex, where it confers citrate efflux and enhanced aluminum tolerance.

Indexed as

AluminumBase SequenceBiological TransportCell MembraneCitric AcidDNA Transposable ElementsGene Expression Regulation, PlantGenotypeGreen Fluorescent ProteinsMicroscopy, ConfocalMolecular Sequence DataOryzaPhylogenyPlant ProteinsPlant RootsPlants, Genetically ModifiedAluminumCitric AcidDNA Transposable ElementsGreen Fluorescent ProteinsPlant Proteins

Identifiers

PMID23204428
PMCPMC3561026
OpenAlexW2159471710

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.