Evidence map›Paper›PMID 23204297›Full record

ArticleJournal of lipid research2013

A common variant highly associated with plasma VEGFA levels also contributes to the variation of both LDL-C and HDL-C.

Maria G Stathopoulou, Amélie Bonnefond, Ndeye Coumba Ndiaye, Mohsen Azimi-Nezhad, Said El Shamieh, Abdelsalam Saleh, Marc Rancier, Gerard Siest, John Lamont, Peter Fitzgerald and 1 more

Erratum issuedAbstract read
In one paragraph

Article in Journal of lipid research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. VEGF-A related SNPs: a cardiovascular context.Frontiers in cardiovascular medicine · 2023
    Review
  7. Variation inFrontiers in cardiovascular medicine · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Association of common polymorphisms in theArchives of medical science : AMS · 2018
    Article
  14. Article
  15. Article
  16. Predictive value of vascular endothelial growth factor polymorphisms on the risk of renal cell carcinomas: a case-control study.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2015
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

11 authors.

Maria G StathopoulouUniversité de Lorraine, Génétique Cardio-vasculaire, EA-4373, Nancy, F-54000, France.
Amélie Bonnefond
Ndeye Coumba Ndiaye
Mohsen Azimi-Nezhad
Said El Shamieh
Abdelsalam Saleh
Marc Rancier
Gerard Siest
John Lamont
Peter Fitzgerald
Sophie Visvikis-Siest

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vascular endothelial growth factor A (VEGFA) is among the most-significant stimulators of angiogenesis. Its effect on cardiovascular diseases and on the variation of related risk factors such as lipid parameters is considered important, although as yet unclear. Recently, we identified four common variants (rs6921438, rs4416670, rs6993770, and rs10738760) that explain up to 50% of the heritability of plasma VEGFA levels. In the present study, we aimed at assessing the contribution of these variants to the variation of blood lipid levels (including apoE, triglycerides, total cholesterol, low- and high-density lipoprotein cholesterol levels (LDL-C and HDL-C)] in healthy subjects. The effect of these single-nucleotide polymorphisms (SNPs) on lipid levels was assessed using linear regression in discovery and replication samples (n = 1,006 and n = 1,145; respectively), followed by a meta-analysis. Their gene×gene and gene×environment interactions were also assessed. SNP rs6921438 was associated with HDL-C (β = -0.08 mmol/l, P(overall) = 1.2 × 10(-7)) and LDL-C (β = 0.13 mmol/l, P(overall) = 1.5 × 10(-4)). We also identified a significant association between the interaction rs4416670×hypertension and apoE variation (P(overall) = 1.7 × 10(-5)). Therefore, our present study shows a common genetic regulation between VEGFA and cholesterol homeostasis molecules. The SNP rs6921438 is in linkage disequilibrium with variants located in an enhancer- and promoter-associated histone mark region and could have a regulatory effect in the expression of surrounding genes, including VEGFA.

Indexed as

Polymorphism, Single NucleotideAdultCholesterol, HDLCholesterol, LDLEpistasis, GeneticFemaleGene-Environment InteractionHumansMaleReproducibility of ResultsVascular Endothelial Growth Factor ACholesterol, HDLCholesterol, LDLVascular Endothelial Growth Factor AVEGFA protein, human

Identifiers

PMID23204297
PMCPMC3546029

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.