Evidence map›Paper›PMID 23204257›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2013

A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens.

Jirapong Jairin, Tetsuya Kobayashi, Yoshiyuki Yamagata, Sachiyo Sanada-Morimura, Kazuki Mori, Kosuke Tashiro, Satoru Kuhara, Seigo Kuwazaki, Masahiro Urio, Yoshitaka Suetsugu and 3 more

Open access · goldAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Jirapong JairinUbon Ratchathani Rice Research Center, PO Box 65, Muang, Ubon Ratchathani 34000, Thailand.
Tetsuya Kobayashi
Yoshiyuki Yamagata
Sachiyo Sanada-Morimura
Kazuki Mori
Kosuke Tashiro
Satoru Kuhara
Seigo Kuwazaki
Masahiro Urio
Yoshitaka Suetsugu
Kimiko Yamamoto
Masaya Matsumura
Hideshi Yasui
Institute of Agrobiological Sciences · JPKyushu University · JPNational Agriculture and Food Research Organization · JPUbonRatchathani Rice Research Center · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we developed the first genetic linkage map for the major rice insect pest, the brown planthopper (BPH, Nilaparvata lugens). The linkage map was constructed by integrating linkage data from two backcross populations derived from three inbred BPH strains. The consensus map consists of 474 simple sequence repeats, 43 single-nucleotide polymorphisms, and 1 sequence-tagged site, for a total of 518 markers at 472 unique positions in 17 linkage groups. The linkage groups cover 1093.9 cM, with an average distance of 2.3 cM between loci. The average number of marker loci per linkage group was 27.8. The sex-linkage group was identified by exploiting X-linked and Y-specific markers. Our linkage map and the newly developed markers used to create it constitute an essential resource and a useful framework for future genetic analyses in BPH.

Indexed as

Genetic LinkageMicrosatellite RepeatsPolymorphism, Single NucleotideAnimalsChromosome MappingGenetic MarkersHemipteraOryzaSequence Analysis, DNASequence Tagged SitesGenetic Markers

Identifiers

PMID23204257
PMCPMC3576655
OpenAlexW2143496527

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.