Evidence map›Paper›PMID 23203987›Full record

ArticleNucleic acids research2013

Ensembl 2013.

Paul Flicek, Ikhlak Ahmed, M Ridwan Amode, Daniel Barrell, Kathryn Beal, Simon Brent, Denise Carvalho-Silva, Peter Clapham, Guy Coates, Susan Fairley and 45 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 641 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
641citing papers in PubMed, 5 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

641 citing papers in PubMed, 5 syntheses or guidelines pooled it.

  1. The Role ofGenes · 2025
    Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Trial
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Chorionic Gonadotropin Beta 7 is a marker of immune evasion in cancer.bioRxiv : the preprint server for biology · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

581 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

55 authors.

Paul FlicekEuropean Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton Cambridge CB10 1SD, UK. flicek@ebi.ac.uk
Ikhlak Ahmed
M Ridwan Amode
Daniel Barrell
Kathryn Beal
Simon Brent
Denise Carvalho-Silva
Peter Clapham
Guy Coates
Susan Fairley
Stephen Fitzgerald
Laurent Gil
Carlos García-Girón
Leo Gordon
Thibaut Hourlier
Sarah Hunt
Thomas Juettemann
Andreas K Kähäri
Stephen Keenan
Monika Komorowska
Eugene Kulesha
Ian Longden
Thomas Maurel
William M McLaren
Matthieu Muffato
Rishi Nag
Bert Overduin
Miguel Pignatelli
Bethan Pritchard
Emily Pritchard
Harpreet Singh Riat
Graham R S Ritchie
Magali Ruffier
Michael Schuster
Daniel Sheppard
Daniel Sobral
Kieron Taylor
Anja Thormann
Stephen Trevanion
Simon White
Steven P Wilder
Bronwen L Aken
Ewan Birney
Fiona Cunningham
Ian Dunham
Jennifer Harrow
Javier Herrero
Tim J P Hubbard
Nathan Johnson
Rhoda Kinsella
Anne Parker
Giulietta Spudich
Andy Yates
Amonida Zadissa
Stephen M J Searle

Funding

UniProt: A Centralized Protein Sequence and Function ResourceU41HG006104 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI APWEILER, ROLF · 2010 to 2014
$23.5M
Integrated human genome annotation: generation of a reference gene setU54HG004555 · NHGRI · SANGER INSTITUTE · PI HUBBARD, TIMOTHY JOHN · 2007 to 2012
$11.2M
Comprehensive Identification of Active Functional Elements in Human ChromatinU54HG004563 · NHGRI · DUKE UNIVERSITY · PI CRAWFORD, GREGORY E · 2007 to 2011
$9.7M
EDAC: ENCODE Data Analysis CenterU01HG004695 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI BIRNEY, EWAN · 2008 to 2012
$6.4M
Biotechnology and Biological Sciences Research Council BB/E011640/1Biotechnology and Biological Sciences Research Council BB/I025506/1NHGRI NIH HHS U01 HG004695NHGRI NIH HHS U01HG004695NHGRI NIH HHS U41 HG006104NHGRI NIH HHS U41HG006104NHGRI NIH HHS U54 HG004555NHGRI NIH HHS U54 HG004563NHGRI NIH HHS U54HG004563Wellcome Trust 095908Wellcome Trust WT062023Wellcome Trust WT079643
6 · The paper itself

Abstract

The Ensembl project (http://www.ensembl.org) provides genome information for sequenced chordate genomes with a particular focus on human, mouse, zebrafish and rat. Our resources include evidenced-based gene sets for all supported species; large-scale whole genome multiple species alignments across vertebrates and clade-specific alignments for eutherian mammals, primates, birds and fish; variation data resources for 17 species and regulation annotations based on ENCODE and other data sets. Ensembl data are accessible through the genome browser at http://www.ensembl.org and through other tools and programmatic interfaces.

Indexed as

Databases, GeneticGenomicsAnimalsGene Expression RegulationGenetic VariationHumansInternetMiceMolecular Sequence AnnotationRatsSoftwareZebrafish

Identifiers

PMID23203987
PMCPMC3531136

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.