ArticleNucleic acids research2013
MIPS PlantsDB: a database framework for comparative plant genome research.
Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.
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101 citing papers in PubMed.
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- Advancing ornamental plant breeding through genomic technologies: opportunities, challenges, and future directions.Functional & integrative genomics · 2025Review
- A Near Complete Genome Assembly of the Oshima Cherry Cerasus speciosa.Scientific data · 2025Article
- A telomere-to-telomere cotton genome assembly reveals centromere evolution and a Mutator transposon-linked module regulating embryo development.Nature genetics · 2024Article
- A graph-based genome and pan-genome variation of the model plant Setaria.Nature genetics · 2023Article
- An improved assembly of the "Cascade" hop (Horticulture research · 2023Article
- Comparative analysis of repeat content in plant genomes, large and small.Frontiers in plant science · 2023Article
- Annotation of Siberian Larch (Plants (Basel, Switzerland) · 2022Article
- TransposonUltimate: software for transposon classification, annotation and detection.Nucleic acids research · 2022Article
- Whole-genome sequence and methylome profiling of the almond [Prunus dulcis (Mill.) D.A. Webb] cultivar 'Nonpareil'.G3 (Bethesda, Md.) · 2022Article
- Exploration of glutathione reductase for abiotic stress response in bread wheat (Triticum aestivum L.).Plant cell reports · 2022Article
- Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.Nucleic acids research · 2022Article
- Finding and Characterizing Repeats in Plant Genomes.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Evolutionary history and pan-genome dynamics of strawberry (Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- K-mer counting and curated libraries drive efficient annotation of repeats in plant genomes.The plant genome · 2021Article
- Concerted genomic and epigenomic changes accompany stabilization of Arabidopsis allopolyploids.Nature ecology & evolution · 2021Article
- Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Cis-regulatory evolution spotlights species differences in the adaptive potential of gene expression plasticity.Nature communications · 2021Article
- A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome.The plant genome · 2021Article
41 more citing papers are in PubMed but not listed here.
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8 authors.
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Abstract
The rapidly increasing amount of plant genome (sequence) data enables powerful comparative analyses and integrative approaches and also requires structured and comprehensive information resources. Databases are needed for both model and crop plant organisms and both intuitive search/browse views and comparative genomics tools should communicate the data to researchers and help them interpret it. MIPS PlantsDB (http://mips.helmholtz-muenchen.de/plant/genomes.jsp) was initially described in NAR in 2007 [Spannagl,M., Noubibou,O., Haase,D., Yang,L., Gundlach,H., Hindemitt, T., Klee,K., Haberer,G., Schoof,H. and Mayer,K.F. (2007) MIPSPlantsDB-plant database resource for integrative and comparative plant genome research. Nucleic Acids Res., 35, D834-D840] and was set up from the start to provide data and information resources for individual plant species as well as a framework for integrative and comparative plant genome research. PlantsDB comprises database instances for tomato, Medicago, Arabidopsis, Brachypodium, Sorghum, maize, rice, barley and wheat. Building up on that, state-of-the-art comparative genomics tools such as CrowsNest are integrated to visualize and investigate syntenic relationships between monocot genomes. Results from novel genome analysis strategies targeting the complex and repetitive genomes of triticeae species (wheat and barley) are provided and cross-linked with model species. The MIPS Repeat Element Database (mips-REdat) and Catalog (mips-REcat) as well as tight connections to other databases, e.g. via web services, are further important components of PlantsDB.
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