Evidence map›Paper›PMID 23203693›Full record

ArticleBiopolymers2012

Large multiple transmembrane domain fragments of a G protein-coupled receptor: biosynthesis, purification, and biophysical studies.

Zhanna Potetinova, Subramanyam Tantry, Leah S Cohen, Katrina E Caroccia, Boris Arshava, Jeffrey M Becker, Fred Naider

Open access · greenAbstract read
In one paragraph

Article in Biopolymers, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Zhanna PotetinovaDepartment of Chemistry, College of Staten Island, The City University of New York, Staten Island, NY 10314, USA.
Subramanyam Tantry
Leah S Cohen
Katrina E Caroccia
Boris Arshava
Jeffrey M Becker
Fred Naider
College of Staten Island · USCity University of New York · USThe Graduate Center, CUNY · USUniversity of Tennessee at Knoxville · US

Funding

PEPTIDE/CELL INTERACTIONS IN SACCHAROMYCES CEREVISIAER01GM022087 · NIGMS · UNIVERSITY OF TENNESSEE KNOXVILLE · PI BECKER, JEFFREY M., NAIDER, FRED R · 1985 to 2011
$4.9M
Peptide-Cell Interactions in Saccharomyces cerevisiaeR56GM022087 · NIGMS · UNIVERSITY OF TENNESSEE KNOXVILLE · PI BECKER, JEFFREY M. · 2007 to 2007
$294k
NIGMS NIH HHS GM22087NIGMS NIH HHS R01 GM022087NIGMS NIH HHS R56 GM022087
6 · The paper itself

Abstract

To conduct biophysical analyses on large domains of GPCRs, multimilligram quantities of highly homogeneous proteins are necessary. This communication discusses the biosynthesis of four transmembrane and five transmembrane-containing fragments of Ste2p, a GPCR recognizing the Saccharomyces cerevisiae tridecapeptide pheromone α-factor. The target fragments contained the predicted four N-terminal Ste2p[G(31) -A(198) ] (4TMN), four C-terminal Ste2p[T(155) -L(340) ] (4TMC), or five C-terminal Ste2p[I(120) -L(340) ] (5TMC) transmembrane segments of Ste2p. 4TMN was expressed as a fusion protein using a modified pMMHa vector in L-arabinose-induced Escherichia coli BL21-AI, and cleaved with cyanogen bromide. 4TMC and 5TMC were obtained by direct expression using a pET21a vector in IPTG-induced E. coli BL21(DE3) cells. 4TMC and 5TMC were biosynthesized on a preparative scale, isolated in multimilligram amounts, characterized by MS and investigated by biophysical methods. CD spectroscopy indicated the expected highly α-helical content for 4TMC and 5TMC in membrane mimetic environments. Tryptophan fluorescence showed that 5TMC integrated into the nonpolar region of 1-stearoyl-2-hydroxy-sn-glycero-3-phospho-(1'-rac-glycerol) micelles. HSQC-TROSY investigations revealed that [(15) N]-labeled 5TMC in 50% trifluoroethanol-d(2) /H(2) O/0.05%-trifluoroacetic acid was stable enough to conduct long multidimensional NMR measurements. The entire Ste2p GPCR was not readily reconstituted from the first two and last five or first three and last four transmembrane domains.

Indexed as

Amino Acid SequenceBiomimeticsBiophysical PhenomenaCell MembraneCyanogen BromideElectrophoresis, Polyacrylamide GelEscherichia coliGenetic VectorsInclusion BodiesMagnetic Resonance SpectroscopyMolecular Sequence DataPeptide FragmentsPlasmidsProtein MultimerizationProtein StabilityProtein Structure, SecondaryCyanogen BromidePeptide FragmentsReceptors, G-Protein-CoupledReceptors, Mating FactorRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSTE2 protein, S cerevisiaeTryptophan

Identifiers

PMID23203693
PMCPMC3542537
OpenAlexW2055722719

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.