Evidence map›Paper›PMID 23203294›Full record

ArticleJournal of muscle research and cell motility2013

Conformational changes at the nucleotide site in the presence of bound ADP do not set the velocity of fast Drosophila myosins.

Catherine C Eldred, Nariman Naber, Edward Pate, Roger Cooke, Douglas M Swank

Abstract read
In one paragraph

Article in Journal of muscle research and cell motility, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact, top 90% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Alternative N-terminal regions ofThe Journal of biological chemistry · 2020
    Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Catherine C EldredDepartment of Biology, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Nariman Naber
Edward Pate
Roger Cooke
Douglas M Swank
Rensselaer Polytechnic Institute · USUniversity of California System · USWashington State University · US

Funding

STRUCTURE/FUNCTION OF MOLECULAR MOTORSP01AR042895 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VALE, RONALD D · 1994 to 2008
$9.8M
Modular and Project Based Training to Enhance Rigor and Reproducibility in Research for Diverse Biomedical CareersT32GM067545 · NIGMS · RENSSELAER POLYTECHNIC INSTITUTE · PI VASHISHTH, DEEPAK · 2004 to 2020
$3.0M
Myosin structural and kinetic mechanisms that differentiate fast and slow muscle R01AR055611 · NIAMS · RENSSELAER POLYTECHNIC INSTITUTE · PI SWANK, DOUGLAS M · 2007 to 2012
$1.6M
Molecular dynamics studies of muscle proteinsR01AR053720 · NIAMS · WASHINGTON STATE UNIVERSITY · PI PATE, EDWARD F · 2007 to 2010
$1.1M
NIAMS NIH HHS AR042895NIAMS NIH HHS AR053720NIAMS NIH HHS AR055611NIAMS NIH HHS P01 AR042895NIAMS NIH HHS R01 AR053720NIAMS NIH HHS R01 AR055611NIGMS NIH HHS T32 GM067545
6 · The paper itself

Abstract

The conformational changes in myosin associated with ADP release and their influence on actin sliding velocity are not understood. Following actin binding, the myosin active site is in equilibrium between a closed and open ADP bound state, with the open state previously thought to favor ADP release and thus expected to be favored in faster myosins. However, our recent work with a variety of myosins suggests the opposite, that the open conformation is dominant in slower myosins, which have higher ADP affinities. To test if this correlation holds for fast myosin isoforms, we determined the relationships between conformational pocket dynamics, ADP affinity and velocity of four Drosophila myosins: indirect flight muscle (IFM) myosin (IFI), embryonic muscle myosin (EMB) and two IFI/EMB chimeras. Electron paramagnetic resonance spectra of nucleotide-analog spin probes (SLADP) bound to IFI subfragment-1 in the absence of actin showed a high degree of immobilization, indicating a predominately closed nucleotide pocket. The A·M·SLADP spectra of all four myosins in fibers (actin bound) also indicated an equilibrium favoring the closed conformation with the closed state closing even further. However, the energetics of pocket closure did not correlate with Drosophila myosin actin velocity suggesting our previous model relating pocket dynamics to velocity does not hold for fast myosin isoforms. We conclude that for these fast myosins, and possibly other fast myosins, velocity is controlled by factors other than the ratio of open to closed nucleotide pocket conformation.

Indexed as

ActinsAdenosine DiphosphateAnimalsBinding SitesDrosophilaDrosophila ProteinsElectron Spin Resonance SpectroscopyModels, MolecularMolecular ConformationMuscle Fibers, SkeletalMyosin SubfragmentsNucleotidesProtein BindingProtein IsoformsRecombinant Fusion ProteinsActinsAdenosine DiphosphateDrosophila ProteinsMyosin SubfragmentsNucleotidesProtein IsoformsRecombinant Fusion Proteins

Identifiers

PMID23203294
PMCPMC3552063
OpenAlexW2010330099

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.