Evidence map›Paper›PMID 23201686›Full record

ArticleNature2012

Bypass of a protein barrier by a replicative DNA helicase.

Hasan Yardimci, Xindan Wang, Anna B Loveland, Inger Tappin, David Z Rudner, Jerard Hurwitz, Antoine M van Oijen, Johannes C Walter

Open access · bronzeAbstract read
In one paragraph

Article in Nature, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. SV40 T-antigen uses a DNA shearing mechanism to initiate origin unwinding.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Transcription-Replication Coordination.Life (Basel, Switzerland) · 2022
    Review
  12. Mechanisms of hexameric helicases.Critical reviews in biochemistry and molecular biology · 2021
    Review
  13. DNA Manipulation and Single-Molecule Imaging.Molecules (Basel, Switzerland) · 2021
    Review
  14. Review
  15. Article
  16. DNA replication machinery: Insights fromComputational and structural biotechnology journal · 2021
    Review
  17. Article
  18. Review
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Hasan YardimciDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Xindan Wang
Anna B Loveland
Inger Tappin
David Z Rudner
Jerard Hurwitz
Antoine M van Oijen
Johannes C Walter
Harvard University · USMemorial Sloan Kettering Cancer Center · USUniversity of Groningen · NL

Funding

Studies on Eukaryotic ReplicationR01GM034559 · NIGMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI HURWITZ, JERARD · 1985 to 2011
$9.3M
The Fanconi anemia pathway: role in DNA interstrand cross-link repairR01HL098316 · NHLBI · HARVARD MEDICAL SCHOOL · PI Johannes Walter · 2010 to 2026
$6.3M
Chromosome Dynamics in Bacillus SubtillsR01GM086466 · NIGMS · HARVARD MEDICAL SCHOOL · PI RUDNER, DAVID Z · 2009 to 2021
$4.2M
Properties of the eukaryotic replicative DNA helicaseR01GM062267 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALTER, JOHANNES · 2001 to 2014
$4.1M
Single-molecule enzymology of the replisomeR01GM077248 · NIGMS · HARVARD MEDICAL SCHOOL · PI VAN OIJEN, ANTOINE M · 2007 to 2011
$1.2M
NHLBI NIH HHS HL098316NHLBI NIH HHS R01 HL098316NIGMS NIH HHS 5 R01 GM034559NIGMS NIH HHS GM077248NIGMS NIH HHS GM086466NIGMS NIH HHS GM62267NIGMS NIH HHS R01 GM034559NIGMS NIH HHS R01 GM062267NIGMS NIH HHS R01 GM077248NIGMS NIH HHS R01 GM086466
6 · The paper itself

Abstract

Replicative DNA helicases generally unwind DNA as a single hexamer that encircles and translocates along one strand of the duplex while excluding the complementary strand (known as steric exclusion). By contrast, large T antigen, the replicative DNA helicase of the simian virus 40 (SV40), is reported to function as a pair of stacked hexamers that pumps double-stranded DNA through its central channel while laterally extruding single-stranded DNA. Here we use single-molecule and ensemble assays to show that large T antigen assembled on the SV40 origin unwinds DNA efficiently as a single hexamer that translocates on single-stranded DNA in the 3'-to-5' direction. Unexpectedly, large T antigen unwinds DNA past a DNA-protein crosslink on the translocation strand, suggesting that the large T antigen ring can open to bypass bulky adducts. Together, our data underscore the profound conservation among replicative helicase mechanisms, and reveal a new level of plasticity in the interactions of replicative helicases with DNA damage.

Indexed as

Antigens, Viral, TumorDNA HelicasesDNA ReplicationDNA, Single-StrandedDNA, ViralReplication OriginSimian virus 40Viral ProteinsAntigens, Viral, TumorDNA HelicasesDNA, Single-StrandedDNA, ViralViral Proteins

Identifiers

PMID23201686
PMCPMC3521859
OpenAlexW2038946742

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.