Evidence map›Paper›PMID 23201543›Full record

ArticleBiochimica et biophysica acta2013

Lipid modification gives rise to two distinct Haloferax volcanii S-layer glycoprotein populations.

Lina Kandiba, Ziqiang Guan, Jerry Eichler

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. A Micrarchaeon Isolate Is Covered by a Proteinaceous S-Layer.Applied and environmental microbiology · 2022
    Article
  6. Viruses · 2022
    Article
  7. Article
  8. Functional Prediction and Assignment ofFrontiers in genetics · 2020
    Article
  9. Archaeal cell surface biogenesis.FEMS microbiology reviews · 2018
    Article
  10. Article
  11. Review
  12. Emerging facets of prokaryotic glycosylation.FEMS microbiology reviews · 2017
    Review
  13. Article
  14. Review
  15. Article
  16. S-layers: principles and applications.FEMS microbiology reviews · 2014
    Article
  17. Review
  18. Article
  19. Bacterial cell-envelope glycoconjugates.Advances in carbohydrate chemistry and biochemistry · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Lina KandibaDepartment of Life Sciences, Ben Gurion University of the Negev, Beersheva, Israel.
Ziqiang Guan
Jerry Eichler
Ben-Gurion University of the Negev · ILDuke Medical Center · US

Funding

STEROL LIPIDSU54GM069338 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DENNIS, EDWARD A · 2003 to 2013
$72.2M
NIGMS NIH HHS GM069338NIGMS NIH HHS U54 GM069338
6 · The paper itself

Abstract

The S-layer glycoprotein is the sole component of the protein shell surrounding Haloferax volcanii cells. The deduced amino acid sequence of the S-layer glycoprotein predicts the presence of a C-terminal membrane-spanning domain. However, several earlier observations, including the ability of EDTA to selectively solubilize the protein, are inconsistent with the presence of a trans-membrane sequence. In the present report, sequential solubilization of the S-layer glycoprotein by EDTA and then with detergent revealed the existence of two distinct populations of the S-layer glycoprotein. Whereas both S-layer glycoprotein populations underwent signal peptide cleavage and N-glycosylation, base hydrolysis followed by mass spectrometry revealed that a lipid, likely archaetidic acid, modified only the EDTA-solubilized version of the protein. These observations are consistent with the S-layer glycoprotein being initially synthesized as an integral membrane protein and subsequently undergoing a processing event in which the extracellular portion of the protein is separated from the membrane-spanning domain and transferred to a waiting lipid moiety.

Indexed as

Archaeal ProteinsBiophysicsChromatography, LiquidEdetic AcidGlycoproteinsGlycosylationHaloferax volcaniiHydrolysisLipidsMass SpectrometryMembrane GlycoproteinsProtein Sorting SignalsProtein Structure, TertiarySpectrometry, Mass, Electrospray IonizationArchaeal ProteinsEdetic AcidGlycoproteinsLipidsMembrane GlycoproteinsProtein Sorting SignalsS-layer proteins

Identifiers

PMID23201543
PMCPMC3560324
OpenAlexW2171577524

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.