Evidence map›Paper›PMID 23200992›Full record

ArticleCurrent biology : CB2013

Tracking shallow chemical gradients by actin-driven wandering of the polarization site.

Jayme M Dyer, Natasha S Savage, Meng Jin, Trevin R Zyla, Timothy C Elston, Daniel J Lew

Abstract read
In one paragraph

Article in Current biology : CB, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Patterning of the cell cortex by Rho GTPases.Nature reviews. Molecular cell biology · 2024
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Mechanism of commitment to a mating partner inMolecular biology of the cell · 2022
    Article
  13. Article
  14. Article
  15. Orientation of Cell Polarity by Chemical Gradients.Annual review of biophysics · 2022
    Review
  16. Article
  17. Article
  18. Article
  19. Chemotactic movement of a polarity site enables yeast cells to find their mates.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Jayme M DyerDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC 27710, USA.
Natasha S Savage
Meng Jin
Trevin R Zyla
Timothy C Elston
Daniel J Lew

Funding

Training Program in Developmental & Stem Cell BiologyT32HD040372 · NICHD · DUKE UNIVERSITY · PI Terry H Lechler · 2001 to 2026
$8.9M
POLARITY ESTABLISHMENT IN YEASTR01GM062300 · NIGMS · DUKE UNIVERSITY · PI LEW, DANIEL J · 2001 to 2016
$5.0M
Spatiotemporal modeling of signal transduction in yeastR01GM079271 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ELSTON, TIMOTHY C, ERREDE, BEVERLY · 2006 to 2017
$4.0M
MAP kinase regulation of cell-fate transitions in yeastR01GM084071 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ELSTON, TIMOTHY C, ERREDE, BEVERLY · 2009 to 2012
$1.4M
NICHD NIH HHS T32 HD040372NIGMS NIH HHS GM62300NIGMS NIH HHS GM79271NIGMS NIH HHS GM84071NIGMS NIH HHS R01 GM062300NIGMS NIH HHS R01 GM079271NIGMS NIH HHS R01 GM084071
6 · The paper itself

Abstract

backgroundMany cells are remarkably proficient at tracking very shallow chemical gradients, despite considerable noise from stochastic receptor-ligand interactions. Motile cells appear to undergo a biased random walk: spatial noise in receptor activity may determine the instantaneous direction, but because noise is spatially unbiased, it is filtered out by time averaging, resulting in net movement upgradient. How nonmotile cells might filter out noise is unknown.

resultsUsing yeast chemotropic mating as a model, we demonstrate that a polarized patch of polarity regulators "wanders" along the cortex during gradient tracking. Computational and experimental findings suggest that actin-directed membrane traffic contributes to wandering by diluting local polarity factors. The pheromone gradient appears to bias wandering via interactions between receptor-activated Gβγ and polarity regulators. Artificially blocking patch wandering impairs gradient tracking.

conclusionsWe suggest that the polarity patch undergoes an intracellular biased random walk that enables noise filtering by time averaging, allowing nonmotile cells to track shallow gradients.

Indexed as

Cell PolarityActinscdc42 GTP-Binding Protein, Saccharomyces cerevisiaeChemotaxisPheromonesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTime FactorsActinscdc42 GTP-Binding Protein, Saccharomyces cerevisiaePheromonesSaccharomyces cerevisiae Proteins

Identifiers

PMID23200992
PMCPMC3543483

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.