Evidence map›Paper›PMID 23196234›Full record

ArticleBioresource technology2013

Molecular characterization of a cold-active recombinant xylanase from Flavobacterium johnsoniae and its applicability in xylan hydrolysis.

Shicheng Chen, Michael G Kaufman, Kerri L Miazgowicz, Michael Bagdasarian, Edward D Walker

Open access · greenAbstract read
In one paragraph

Article in Bioresource technology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Novel Virulence Factors DecipheringInternational journal of molecular sciences · 2022
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Characterization of a novel cold-active xylanase from Luteimonas species.World journal of microbiology & biotechnology · 2018
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Cold and Hot Extremozymes: Industrial Relevance and Current Trends.Frontiers in bioengineering and biotechnology · 2015
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shicheng ChenDept of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA. shicheng@msu.edu
Michael G Kaufman
Kerri L Miazgowicz
Michael Bagdasarian
Edward D Walker
Michigan State University · US

Funding

Larval Mosquito Feeding and Microbial InteractionsR37AI021884 · NIAID · MICHIGAN STATE UNIVERSITY · PI WALKER, EDWARD D · 2008 to 2017
$3.7M
NIAID NIH HHS R37 AI021884NIAID NIH HHS R37AI21884
6 · The paper itself

Abstract

A novel xylanase gene, xyn10A, was cloned from Flavobacterium johsoniae, overexpressed in a flavobacterial expression system, the recombinant enzyme purified by Ni-affinity chromatography, and enzyme structure and activity analyzed. Xyn10A was found to be a modular xylanase with an Fn3 accessory domain on its N-terminal and a catalytic region on the C-terminal. The optimum pH and temperature for Xyn10A was 8.0 and 30 °C, but Xyn10A retained 50% activity at 4 °C, indicating that Xyn10A is a cold-active xylanase. A Fn3-deletion xylanase had relative activity ca. 3.6-fold lower than the wild-type, indicating that Fn3 promotes xylanase activity. The Fn3 region also contributed to stability of the enzyme at elevated temperatures. However, Fn3 did not bind this xylanase to insoluble substrates. The enzyme hydrolyzed xylo-oligosaccharides into xylobiose, and xylose with xylobiose as the main product, confirming that Xyn10A is a strict endo-β-1,4-xylanase. Xyn10A also hydrolyzed birchwood and beechwood xylan to yield mainly xylose, xylobiose and xylotriose.

Indexed as

Amino Acid SequenceCold TemperatureEndo-1,4-beta XylanasesEnzyme ActivationEnzyme StabilityFlavobacteriaceaeHydrolysisMolecular Sequence DataMolecular WeightRecombinant ProteinsSpecies SpecificityXylansEndo-1,4-beta XylanasesRecombinant ProteinsXylans

Identifiers

PMID23196234
PMCPMC4106359
OpenAlexW1976608409

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.